Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00594 ATGTCTTGTGGGAGGCGTAGTAGATTATTGTACCTTCGGATGGCGGCTAAACCACTTACTACTGAGGCTATTGCCGTAACTGAGAAGAAGATGGACATGGCTTTAGACGATATTATCAAAATGTCCAAAAATACTGCAAATAAAGCCAGGAAGGAAAGAAGGTTTCCGAACAAAATGCAGAAATTTCCAAATAATGCTACTCAAGATAGACCTAGGAAGTTGCAGCGTTTCATGGATTCAAGATCTTCTGTAAGACAGGGGGCTTTGGCCAAAAGAAGGTCAAATTTTCAAGGGAATCAGTTTGCTTTGACAACTGAGGTTGCAAGAAGGGCTGTAGTTGCTCCAACTCGCCCTAGAGCTTTTTATCGTAGGGCACCCAACTGGAATAAGACAAGGGTTGATGCTCCACCGGTTCCAAGAAAGCCTTTTAATAATCGAACCTTTGTTCCCAAGGTAGCTGCACCGGCCCAGCCACAAACCAATGCTACGCAGAGACAGAGACCACAAACAAATGCCACGCAGAGACAGAGACCGCAAACTCTCGACTCACTGTTTGCCAACATGAAGGAACAGAGGCTGAGGGTGTTGTCACAGCGACAGAATGGCGCCGCACAACAACGGAATGGTGGTCGCCAGCAAATACCTCCATGGCAAAGAGGCCGTTTTGGTAACTGA 675 46.52 MSCGRRSRLLYLRMAAKPLTTEAIAVTEKKMDMALDDIIKMSKNTANKARKERRFPNKMQKFPNNATQDRPRKLQRFMDSRSSVRQGALAKRRSNFQGNQFALTTEVARRAVVAPTRPRAFYRRAPNWNKTRVDAPPVPRKPFNNRTFVPKVAAPAQPQTNATQRQRPQTNATQRQRPQTLDSLFANMKEQRLRVLSQRQNGAAQQRNGGRQQIPPWQRGRFGN 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2885224 2889487 - CmoCh16G005940.1 Cmo16g00594 399629

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00594 224 MobiDBLite consensus disorder prediction 198 213 - -
Cmo16g00594 224 PANTHER RIBOSOME MATURATION FACTOR 14 224 - -
Cmo16g00594 224 MobiDBLite consensus disorder prediction 198 224 - -
Cmo16g00594 224 MobiDBLite consensus disorder prediction 153 180 - -
Cmo16g00594 224 MobiDBLite consensus disorder prediction 154 180 - -
Cmo16g00594 224 PANTHER RIBOSOME MATURATION FACTOR 14 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00594 - - - cmax:111483428 370.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00594 Cmo-Chr16:2885224 Cmo04g00729 Cmo-Chr4:3631228 8.65E-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g141 . . . . . . . . . Cmo16g00594 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0855 Cone9ag0857 . . . . . . . . . . . . . . . . Cma16g00542 . . . . . . . . . . . . . . . . . . . Csa04g00664 Chy07g01148 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013307 0 2 1 0 1 0 2 0 0 1 0 0 2 1 1 2 0 2 2 0 1 1 1 1 1 0 1 2 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00594 Cmo_Chr16 FPKM 13.720204 14.575183 17.239754 16.23171 21.847919 21.841227 22.553272 17.950224 17.550287 17.868328