Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00596 ATGGCCCCCTCCAAATTCTCCGTCGCCATCCTCCTCCTCCTTTTACGCTTATTGATTCTCCACGGAGCTGAATCGCAGTTTCTTTGCAAAAGCTCCTCCTGCAGTGGCGTTTCCTTGCCTGCCGTTCGATTTCCGTTTCGACTGAAGAGTTCGCAGGATTCTCGATGTGGATTCCAGCCGGATTTCGACCTGTTCTGCAACAATCGAAGCCAGACGATTCTGACTCTCCCGAACGCTGGAGACCTCGTGGTGGAGTTTATCGATTACAGATTTCAGAGGCTGTGGATAAACGATCCGGATCAATGTTTTCCGAGACGACTAGTTGTAAACTCTTTTGATCTGGAGAACTCGCCGTTTGTTTCTAACTATCGATTAGAAGAGTATACTGTTCTTAATTGCTCCTATTACGTCGATACGTTGCCGTTCGATCGTGTCCGGAAGATCAAATGTATGAGCGGCAGAAACCACTCTGTAATCAATGTGCCGAACAGAGACCTTAAGGCGGTTTTCGCTTTCCTGCCATCACCGTGTAACGTTATTGCGACGAAGAGGCTTCCGTTGACGGGGATGGAGCTTGAAGAAGGAATGGTGGTGAATTGGAGCGAGCCAGATTGCGGATATTGCGAGATGCGCGGTGGAGATTGTGGATTCAAAAGCAATTCGAGTGCCGAAATCGAGTGTTTCAATCTTCCAAAAGGCGGTATCCCACGGGGTGCCAAATACGGATTGATCATCGGCGTAGCAATCCCAGGCGTCCTCTTCCTACTTGGGCTGGTCTGTTTCATCTGCGGCAAGTTCAAGGCCTTTGCTCGCCTCAATAGTCCATCATCATATCTTTCCCCTTCAATGGGCCGCCAGCCCACTTCCACCGTAGCAGGCCTCGATGGGCCGACAATTGAATCATTCCCCAAAACCATATTGGGCCAGAGTCGACGACTTCCAAAGCCCAGCGACACCACTTGTGCTATTTGCCTGTCGGAGTATCAAACGAAAGAAGCGATCAGAACCATTCCAGATTGTGGTCACTTTTTCCATGCCAATTGCGTCGATGAGTGGCTTAAGTTAAATGCCACGTGTCCGGTGTGCCGGAGCTCGCCGGAGGATTCCTCCGCCACCTCCACACCTTCTCAGACTGTGTCGGTGTCAATGCCGACGTCCCCGGGCGCCACGCTTCGATTCCGGCACTGTTCTTCCGGCCTCCTCCCTTCTCCGCCTCCGTCCTCGCGATCACTGTCGAGCTCTCATTCAGTTGAAAAGCAAGCGAGCAATCTGAGAAAATTAATCAATTACATGACTGTGCTCTAG 1305 51.03 MAPSKFSVAILLLLLRLLILHGAESQFLCKSSSCSGVSLPAVRFPFRLKSSQDSRCGFQPDFDLFCNNRSQTILTLPNAGDLVVEFIDYRFQRLWINDPDQCFPRRLVVNSFDLENSPFVSNYRLEEYTVLNCSYYVDTLPFDRVRKIKCMSGRNHSVINVPNRDLKAVFAFLPSPCNVIATKRLPLTGMELEEGMVVNWSEPDCGYCEMRGGDCGFKSNSSAEIECFNLPKGGIPRGAKYGLIIGVAIPGVLFLLGLVCFICGKFKAFARLNSPSSYLSPSMGRQPTSTVAGLDGPTIESFPKTILGQSRRLPKPSDTTCAICLSEYQTKEAIRTIPDCGHFFHANCVDEWLKLNATCPVCRSSPEDSSATSTPSQTVSVSMPTSPGATLRFRHCSSGLLPSPPPSSRSLSSSHSVEKQASNLRKLINYMTVL 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2899336 2902792 + CmoCh16G005960.1 Cmo16g00596 399631

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00596 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 368 IPR013083 -
Cmo16g00596 434 Pfam Ring finger domain 320 363 IPR001841 -
Cmo16g00596 434 Pfam Wall-associated receptor kinase galacturonan-binding 29 98 IPR025287 GO:0030247
Cmo16g00596 434 ProSiteProfiles Zinc finger RING-type profile. 321 363 IPR001841 -
Cmo16g00596 434 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 9 386 - -
Cmo16g00596 434 Pfam Wall-associated receptor kinase C-terminal 189 228 IPR032872 -
Cmo16g00596 434 SUPERFAMILY RING/U-box 314 366 - -
Cmo16g00596 434 MobiDBLite consensus disorder prediction 364 386 - -
Cmo16g00596 434 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 386 - -
Cmo16g00596 434 SMART ring_2 321 362 IPR001841 -
Cmo16g00596 434 CDD RING-H2_PA-TM-RING 320 363 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00596 - - - bhj:120071243 647.121
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g01042 Cmo16g00596 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01042 Cmo-Chr6:8109911 Cmo16g00596 Cmo-Chr16:2899336 2.08E-45 dispersed
Cmo16g00596 Cmo-Chr16:2899336 Cmo17g00017 Cmo-Chr17:77295 4.04E-21 dispersed
Cmo16g00066 Cmo-Chr16:300577 Cmo16g00596 Cmo-Chr16:2899336 4.72E-35 wgd
Cmo16g00596 Cmo-Chr16:2899336 Cmo04g00734 Cmo-Chr4:3649167 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g133 Blo02g01150 . Bda06g00147 . Bpe05g00694 Bpe07g00071 . . Cmo06g01042 Cmo16g00596 . . . . . Cpe14g00461 . . . . . . . . . . . . . . . Cone8ag0244 . . . . . . . . . . . . . . Bma12g00608 . . . . Cma16g00544 Car06g00858 . . . . . . . . . . . . . . . . . . Csa04g00658 Chy07g01153 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008451 2 1 1 1 2 1 2 1 1 1 0 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00596 Cmo_Chr16 FPKM 2.077758 0.946664 0.0 0.0 1.026488 0.0 1.159572 0.903902 1.219033 0.819141