Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00617 ATGGCGGTCAATACGACGATGGTGGCTGGCTGTCCGGCGGCAATGAAAGCAACGTCGAACGGCGTGTTTCAAGGCGACAACCCTCTTGACTTCGCTCTCCCTTTGGCTATTCTTCAAATATGTTTGGTAGTGATTCTTACGCGTCTTCTTGGTTTGCTTCTCCGACCGCTTAGACAACCTCGAGTCATTGCTGAGATTGTGGGCGGAATATTGCTGGGACCGTCGGCGGTAGGGCGGAGCCAAGAATTCCTACACAGAGTATTTCCGGCGAAAAGCTTATCGGTTTTGGACACGTTGGCGAATTTGGGTCTTTTGTTCTTCCTTTTTCTGGTGGGGTTGGAGTTAGATCCCAACTCCCTCCGCCGTACCGGAAAGGGTGCAATGTCTATAGCCGCCGCCGGAATCACCCTCCCTTTCATCCTCGGCATTGGCACCTCCTTTGTACTCCGCTCCACCATCTCCAAAGGGGTCGACGGCCCTCCTTTTCTGGTTTTCATGGGCGTAGCTCTCTCCATTACTGCTTTCCCTGTCCTCGCCCGCATCCTCGCCGAGCTCAAGCTCTTAACCACCAACGTTGGTCGAATGGCCATGTCCGCCGCCGCCGTTAACGACGTCGCCGCCTGGATCCTCCTCGCCCTTGCCATCGCCCTCTCCGGCACCGGCAACTCCCCTCTCGTTGCCCTCTGGGTCTTCCTCTGTGGCTCTGGTTTTGTCCTGCTCTGCTTCTTCGCTCTCCCGCCGGTCTTCCGGTGGATGTCCCTCCGTTGCGCCGACGGCGAGCCGGTTAGCGAACTCTACATTTGCGCCACTTTATCCACCGTCTTGGCCGCTGGATTCATCACCGATTTAATCGGAATCCATGCTCTGTTCGGCGCTTTCGTTGTCGGCGTCCTCGTCCCAAAAGACGGCCCACTCGCCGGAGCTCTCGTCGAGAAAGTCGAAGATCTCGTCTCGGGGTTATTCCTCCCTCTGTATTTCGTATCAAGTGGATTGAAAACCGACATTACAACAATCAAAGGAGCTCAATCATGGGGTCTTCTCGTACTCGTCGTTGTCACCGCTTGTTTTGGGAAAATCATCGGCACAATATCAGTGGCTCTGCTTTGCAAGATGCCATTCCGTGAATCTCTGGCTTTAGGATTCTTAATGAACACAAAAGGGCTTGTGGAATTGATCGTCCTCAACATTGGGAAAGACAGAAAAGTTTTAAACGAACAGACCTTTGCAATTCTTGTTCTAATGGCGATCATCACAACCTTCATTACTACCCCAATTGTAATGGCGGTTTACAAGCCGGCAAAAAAACAGAGCAAATCCGATTACACGAACAGGACAATCGAGCGGCAGGACACGAATTCTGAGCTGCGGATTTTGGCTTGCTTTCACTCTGTTACCAACATCCCTTCAATTTTGAATCTAATTGAGGTTTCCCGTGGGACGGAGGCGAAAGAAGCCCGTGGTCGGCGGCTTTGCGTTTATGCAATGCATTTAATGGAGCTGACGGAGAGGTCGTCCGCCATTGTTATGGTCCACCGAGCTAGAAAGAACGGCCTACCGTTCTGGAATAAAGGAGGAAAGTCCGATTCCGACCAAATCGTTGTGGCGTTTGAGGCTTTTCAGCAGCTAAGTCGAGTGTCTATTCGTCCAATGACAGCGATTTCTCCGTTCTCCAACATGCACGAAGATGTCTGCAACAGCGCCGAGAGGAAACGCGCCGCCATTATCATCCTCCCATTCCACAAACACCAAAGGTTCGATGGATCTTTGGAGACGACACGAGCTGATTTCCGATGGGTAAATCAAAAAGTGCTGGAGCAGCCACCATGCTCTGTCGGGATCTTGGTCGACAGAGGTTTAGGAGGCGGTTCCCATATCTGTGCTAGCAATGTCTCATCCACCATAACCGTCTTCTTCTTCGGCGGCCGAGACGACCGTGAAGCTCTCGCCTACGGTCGGAGAATGGCAGAGCATCCGGGAATAACACTAAACGTGGTTCGCTTCCTTCCCAGCTCCGACATCGGCGTTGAATCCACGGTGGTTGACATTGATCAAACAATACTGACGGAGTTCAAGGAGAAAAAAACAGAGGACGAGTCGGTGAGGTACGAGGAGAGGGCGGTGGGGAAAGGCAGCGAGGCGGTTGAAGTAATCAAGGAGTTCAGTCGATGCCATTTGATATTGGTGGGTCAGGTGCCGGAAGGGCCAGTCTTTGAGAGCCTCCATTTGAAGATCAATGCCGAGTTCTCGGAGTTGGGTCCCGTCGGCGGCTTGTTGACATCACCGGAGCTCTCGACGGCAGCTTCCGTGTTGGTGGTGCAACAGTTTCGAGGTCCGTTGGTGCCATCTCCGTCGACGTCCACGGCCATGGTCTTGCCGGAAGACGTTGAGTAA 2391 52.86 MAVNTTMVAGCPAAMKATSNGVFQGDNPLDFALPLAILQICLVVILTRLLGLLLRPLRQPRVIAEIVGGILLGPSAVGRSQEFLHRVFPAKSLSVLDTLANLGLLFFLFLVGLELDPNSLRRTGKGAMSIAAAGITLPFILGIGTSFVLRSTISKGVDGPPFLVFMGVALSITAFPVLARILAELKLLTTNVGRMAMSAAAVNDVAAWILLALAIALSGTGNSPLVALWVFLCGSGFVLLCFFALPPVFRWMSLRCADGEPVSELYICATLSTVLAAGFITDLIGIHALFGAFVVGVLVPKDGPLAGALVEKVEDLVSGLFLPLYFVSSGLKTDITTIKGAQSWGLLVLVVVTACFGKIIGTISVALLCKMPFRESLALGFLMNTKGLVELIVLNIGKDRKVLNEQTFAILVLMAIITTFITTPIVMAVYKPAKKQSKSDYTNRTIERQDTNSELRILACFHSVTNIPSILNLIEVSRGTEAKEARGRRLCVYAMHLMELTERSSAIVMVHRARKNGLPFWNKGGKSDSDQIVVAFEAFQQLSRVSIRPMTAISPFSNMHEDVCNSAERKRAAIIILPFHKHQRFDGSLETTRADFRWVNQKVLEQPPCSVGILVDRGLGGGSHICASNVSSTITVFFFGGRDDREALAYGRRMAEHPGITLNVVRFLPSSDIGVESTVVDIDQTILTEFKEKKTEDESVRYEERAVGKGSEAVEVIKEFSRCHLILVGQVPEGPVFESLHLKINAEFSELGPVGGLLTSPELSTAASVLVVQQFRGPLVPSPSTSTAMVLPEDVE 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3018587 3021454 + CmoCh16G006170.1 Cmo16g00617 399652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00617 796 PANTHER CATION/H(+) ANTIPORTER 17 10 780 - -
Cmo16g00617 796 Gene3D - 35 440 IPR038770 -
Cmo16g00617 796 Pfam Sodium/hydrogen exchanger family 41 425 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cmo16g00617 796 PANTHER CATION/H + ANTIPORTER 10 780 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00757 Cmo-Chr4:3766475 Cmo16g00617 Cmo-Chr16:3018587 0 dispersed
Cmo16g00617 Cmo-Chr16:3018587 Cmo16g00619 Cmo-Chr16:3024313 0 dispersed
Cmo16g00617 Cmo-Chr16:3018587 Cmo16g00618 Cmo-Chr16:3023907 3.85E-23 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00617 - - csv:101203169 1296.18