Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00620 ATGGCTTCGAATGCTACGACAGTAACCAAATGTCCATCCCCAATGAAAGCAACATCGAACGGCATTTTCCAGGGCGATAATCCTCTTGATTTCGCTCTTCCTCTTGTCATTCTACAAATATGTTTGGTAGTTGTTCTTACTCGTGGTCTTGCTTTTCTTCTGAGGCCGTTAAAACAGCCGCGAGTGATCGGAGAAATCATTGGAGGAATACTTCTAGGACCATCAGCTCTCGGACGTAACAAGAACTTTCTTCATACGATATTTCCATCCAATAGTATCACGTTGTTAGATACCATAGCGAACATCGGATTGTTATTCTTTCTGTTTCTTGTGGGTCTCGAGTTGGATATAAAGTCGATACGTCGTACTGGAAAGAAGGCTCTTGGCATTGCCATTACCGGAATTTGCCTTCCGTTTGCATTAGGAATTGGATCGTCATTTGTTCTTCGAGAAACCATATCCAAAGGTGTAAATGCTTCTGCGTTTCTCATATTCATGGGTGTTGCACTTTCGATAACGGCATTTCCCGTCTTAGCTCGTATTCTTGCCGAGCTTAAACTACTGACAACTGATGTTGGTAGGATGGCTATGTCTGCTGCAGCAGTAAACGACGTAGCTGCCTGGATTCTCCTTGCTCTCGCCATTGCGCTATCTGGTTCTGATAAATCTCCCCTAACTGCAGTTTGGGTCCTTTTATCTGGCTGTGGCTTTGTTATAGCTGCTATTGTCATTTTATCCCCTGTTTTCAAATGGATGACCAAGCAGTGTTTTCAAGGGGAGCCGGTACGTGAAATCTACATATGCGCTACATTGGCGATCGTCCTAGCTGCTGGATTTGCCACGGATTTTATCGGTATACATGCTATGTTTGGAGCTTTTGTTGTCGGAGTATTAGTTCCAAAGGATGGACCATTAGTAGGTGCATTGGTAGAGAAAATAGAGGATCTTGTTTCTGGTCTATTCCTGCCTCTTTACTTTGTCTCAAGTGGATTGAAGACTAATGTAGCCACAATTCAAGGAGCACAGTCCTGGGGTCTCCTAGTTTTAGTTATCGTTACCGCCTGTTCTGGAAAAATCATCGGCACGTTTCTCGTGTCCATTCTTTGTAAAGTACCCGTTCGTGAGGCTCTTGCATTAGGATTTCTAATGAACACGAAAGGGTTGGTGGAGCTTATTGTTCTCAATATTGGAAAAGACAGAAAGGTTTTGAATGACCAAACCTTTGCTATAATGATTCTAATGGCTCTTTTTACTACTTTCATTACCACTCCCCTTGTCATTGCTGTATACAAACCGGCAAGGAGTGCCAAAATAGCTGATTATAAGCATAGGAAGATTGAAAGGAAAAACAAGAACACACAACTTCGGATTATGACCTGTTTTCATAGTGCAGGAAACATTCCATCGATTATTAATCTGCTCGAGGTGTCGAGAGGAACCGAGAAGGACAAAGAGCTTTGTGTATATGCAATGCATCTCATGGAGCTGTCCGAGAGGTCCTCGGCCATTTTAATGGTTCACAAGGCGAGGAAAAACGGGTTGCCTTTCTCGATCAAGGGTCGGAGGTCAGATTCCAACCATGTTATTGTTGCATTTGAAGCTTACCGACAACTGAGCAGAGTATTCATTCGACCGATGACGGCGATCTCCTCCATGTCTGATATACATGAAGATATTTGTGCCACTGCTGAGAGGAAAAAAACTGCAATCATAATTCTTCCATTTCATAAGCACCTGAGGGTGGATGGTTCGCTGGAGACTACTCGTAGCAGCATTCGTGTTGTTAATCAGAATGTACTCGAACATGCTCGATGTTCGGTTGGAATTTTAGTTGATCGTAGTTTTGGTGGAACAACCCATGTTTCATCGAGCCATGTTTCGCTTTTCGTCACTGTTTTATTCTTTGGTGGTGGAGATGATCGCGAAGCGCTTTCTTATGGAATTCGTATGGCCGAGCACCCTGGGATTAGATTGATGGTTATTCGTTTCTTTGTCGAACCCGAACCTTCTGGGGAGATAGTCAGTGCTGATACTGTTGGCAATTCTCCTGTGAAGTCAGTTTCTCAGGATGATGAATTTCTTTCCGAGTTCAAGCACGATACGTGCAAGAATGATTCCATAATATATGTCGAGAAAACCGTAAGAAGTGCTGCAGAAGTAATGGATACAGTGCAGGAGATGAAAAACTGCAATCTGTATCTCGTTGGGCGAACACCAGATATCAAAGCTACATATATCTTGAACAGAAGCGACTGTCCAGAGCTCGGTCCAGTCGGGAACCTGTTGACTTCCCCAAACTTCCCGAGTTTGGCGTCGGTTTTGGTGGTGCAGCAATATCGTTCCGAGTCGCTGGTGAATTCAGCTTCAGATTCTGGTGATGGAGAATCAGAATCAGCATAG 2400 43.71 MASNATTVTKCPSPMKATSNGIFQGDNPLDFALPLVILQICLVVVLTRGLAFLLRPLKQPRVIGEIIGGILLGPSALGRNKNFLHTIFPSNSITLLDTIANIGLLFFLFLVGLELDIKSIRRTGKKALGIAITGICLPFALGIGSSFVLRETISKGVNASAFLIFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAIALSGSDKSPLTAVWVLLSGCGFVIAAIVILSPVFKWMTKQCFQGEPVREIYICATLAIVLAAGFATDFIGIHAMFGAFVVGVLVPKDGPLVGALVEKIEDLVSGLFLPLYFVSSGLKTNVATIQGAQSWGLLVLVIVTACSGKIIGTFLVSILCKVPVREALALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMILMALFTTFITTPLVIAVYKPARSAKIADYKHRKIERKNKNTQLRIMTCFHSAGNIPSIINLLEVSRGTEKDKELCVYAMHLMELSERSSAILMVHKARKNGLPFSIKGRRSDSNHVIVAFEAYRQLSRVFIRPMTAISSMSDIHEDICATAERKKTAIIILPFHKHLRVDGSLETTRSSIRVVNQNVLEHARCSVGILVDRSFGGTTHVSSSHVSLFVTVLFFGGGDDREALSYGIRMAEHPGIRLMVIRFFVEPEPSGEIVSADTVGNSPVKSVSQDDEFLSEFKHDTCKNDSIIYVEKTVRSAAEVMDTVQEMKNCNLYLVGRTPDIKATYILNRSDCPELGPVGNLLTSPNFPSLASVLVVQQYRSESLVNSASDSGDGESESA 799
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3029204 3033606 + CmoCh16G006200.1 Cmo16g00620 399655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00620 799 Pfam Sodium/hydrogen exchanger family 42 425 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cmo16g00620 799 PANTHER CATION/H + ANTIPORTER 7 791 - -
Cmo16g00620 799 Gene3D - 35 438 IPR038770 -
Cmo16g00620 799 PANTHER CATION/H(+) ANTIPORTER 18 7 791 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00449 Cmo-Chr3:5050317 Cmo16g00620 Cmo-Chr16:3029204 0 dispersed
Cmo04g00758 Cmo-Chr4:3785321 Cmo16g00620 Cmo-Chr16:3029204 9.74E-09 dispersed
Cmo07g01023 Cmo-Chr7:5063025 Cmo16g00620 Cmo-Chr16:3029204 0 dispersed
Cmo16g00620 Cmo-Chr16:3029204 Cmo20g01059 Cmo-Chr20:9767041 0 dispersed
Cmo16g00619 Cmo-Chr16:3024313 Cmo16g00620 Cmo-Chr16:3029204 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00620 - - csv:101223205 1368.99