Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00640 ATGGCGCTTAAAGTTTATGCGGATCGGATGTCACAGCCATCTCGCGCCGTCCTCATCTTCTGCAAGGTTAACGGGATTGCATTTGAGGAGGTGCGGGTAGACTTGTCCAAACTCCAACAGCTGTCTCCCGAATTCAAAGAGGTCAACCCAATGGCAAAGGTTCCTGCCATTGTTGATGGGAGATTTAAGCTGTTCGAGAGTCATGCTATTCTTATCTACCTTTCTTGTGCGTTTCCTGGTGTGGCAGATCACTGGTATCCAGCCGATCTTTTCAAGAGGGCTAAAATAAACTCTGTATTGGACTGGCATCATTCTAATTTACGGATTGGTGCAGCTCCTTTTGTATTCTATACTGTTCTAGCACCTTTGTTTGGCCGTCCTCAGAATTCTCAAGCAGCTGCTGAAGCTGAGGTGCTTTTATCCAAGTCACTTTCGAAAATCGAGTCATTTTGGCTGAAGGGGAACGGGAAGTTTTTGGTAGGCGGCCTTAAACCATCCATAGCTGATCTAAGCTTGGTTTGTGAAATCATGCAACTAGAGCTTTTGGATGAGAAGGATCACAGTCGAATTCTGGGTCCGTACCAGAAAGTGAGGGAGTGGGTTGAGAATACTAGAAATGCTGCAAACCCACATTTTGATGAGGTTCATAAGCTTCTCTTTAAGCTCAAAGCAACCCTTCAAAAGCAGCGCTCAGAAAAATTGACTTCAAAGATGTGA 717 45.05 MALKVYADRMSQPSRAVLIFCKVNGIAFEEVRVDLSKLQQLSPEFKEVNPMAKVPAIVDGRFKLFESHAILIYLSCAFPGVADHWYPADLFKRAKINSVLDWHHSNLRIGAAPFVFYTVLAPLFGRPQNSQAAAEAEVLLSKSLSKIESFWLKGNGKFLVGGLKPSIADLSLVCEIMQLELLDEKDHSRILGPYQKVREWVENTRNAANPHFDEVHKLLFKLKATLQKQRSEKLTSKM 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3156791 3160796 - CmoCh16G006400.1 Cmo16g00640 399675

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00640 238 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 227 IPR010987 -
Cmo16g00640 238 SFLD Main.4: Theta-like 1 231 - -
Cmo16g00640 238 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Cmo16g00640 238 Gene3D Glutaredoxin 1 82 - -
Cmo16g00640 238 Pfam Glutathione S-transferase, C-terminal domain 126 206 IPR004046 -
Cmo16g00640 238 CDD GST_N_Theta 3 78 IPR040075 -
Cmo16g00640 238 Gene3D - 83 238 - -
Cmo16g00640 238 SFLD Main (cytGST) 1 231 - -
Cmo16g00640 238 Pfam Glutathione S-transferase, N-terminal domain 1 74 IPR004045 -
Cmo16g00640 238 CDD GST_C_Theta 92 222 IPR040077 -
Cmo16g00640 238 PANTHER GLUTATHIONE S-TRANSFERASE T1-RELATED 1 233 IPR043377 -
Cmo16g00640 238 SUPERFAMILY GST C-terminal domain-like 83 217 IPR036282 -
Cmo16g00640 238 SUPERFAMILY Thioredoxin-like 2 87 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00640 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101211608 420.239
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00403 Cmo-Chr8:2501640 Cmo16g00640 Cmo-Chr16:3156791 2.47E-10 dispersed
Cmo16g00640 Cmo-Chr16:3156791 Cmo17g01082 Cmo-Chr17:8958042 1.16E-10 dispersed
Cmo16g00640 Cmo-Chr16:3156791 Cmo04g00779 Cmo-Chr4:3893619 5.74E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g333 Blo02g01106 . . Bda08g00522 Bpe05g00640 . . . . Cmo16g00640 . . . . . Cpe14g00502 . . . . . . . . Cla07g00766 Cam07g0822 Cec07g0880 Cco07g0857 Clacu07g0801 Cmu07g0806 Cre07g1161 . . . Cone9ag0776 . . . Cme07g01625 . . . . . . Bma05g00815 . . . . . Cma16g00590 . . . . . . . . . . . . . . . . . . . Csa04g00600 Chy07g01212 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo17g01082 CST 1 209 Glutathione S-transferase Gene Family AT4G02520 59.4 6.6e-65 244.6
Cmo08g00403 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.5 2.5e-64 242.7
Cmo08g00404 CST 5 221 Glutathione S-transferase Gene Family AT4G02520 54.5 1.0e-57 220.7
Cmo17g01082 CST 1 210 Glutathione S-transferase Gene Family AT2G02930 60.6 2.1e-66 249.6
Cmo08g00403 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.7 8.6e-65 244.2
Cmo08g00404 CST 5 222 Glutathione S-transferase Gene Family AT2G02930 55.2 7.8e-58 221.1
Cmo08g00403 . 5 206 Glutathione S-transferase Gene Family AT1G02950 54.2 9.1e-61 231.1
Cmo17g01082 CST 3 206 Glutathione S-transferase Gene Family AT1G02950 55.1 1.4e-58 223.8
Cmo08g00404 CST 6 218 Glutathione S-transferase Gene Family AT1G02950 51.9 2.0e-55 213.4
Cmo08g00403 . 1 210 Glutathione S-transferase Gene Family AT1G02930 58.6 2.9e-65 245.7
Cmo17g01082 CST 1 210 Glutathione S-transferase Gene Family AT1G02930 59.0 8.5e-65 244.2
Cmo08g00404 CST 5 222 Glutathione S-transferase Gene Family AT1G02930 53.2 1.7e-57 219.9
Cmo17g01082 CST 1 210 Glutathione S-transferase Gene Family AT1G02920 60.5 3.4e-66 248.8
Cmo08g00403 . 1 210 Glutathione S-transferase Gene Family AT1G02920 58.6 7.7e-66 247.7
Cmo08g00404 CST 5 222 Glutathione S-transferase Gene Family AT1G02920 54.6 7.0e-59 224.6
Cmo08g00403 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.3 1.9e-69 260.0
Cmo17g01082 CST 1 214 Glutathione S-transferase Gene Family AT2G47730 57.7 1.1e-64 244.2
Cmo08g00404 CST 4 225 Glutathione S-transferase Gene Family AT2G47730 53.4 3.0e-59 226.1
Cmo03g00394 . 3 216 Glutathione S-transferase Gene Family AT3G09270 52.1 8.2e-66 247.7
Cmo03g00395 . 3 213 Glutathione S-transferase Gene Family AT3G09270 52.4 3.8e-63 238.8
Cmo07g01074 . 3 213 Glutathione S-transferase Gene Family AT3G09270 51.9 2.2e-58 223.0
Cmo04g00338 . 4 219 Glutathione S-transferase Gene Family AT1G69930 51.2 2.7e-59 226.1
Cmo04g00338 . 1 216 Glutathione S-transferase Gene Family AT1G59670 52.1 2.1e-56 216.5
Cmo04g00338 . 1 216 Glutathione S-transferase Gene Family AT1G59700 54.3 8.3e-61 231.1
Cmo04g00338 . 6 223 Glutathione S-transferase Gene Family AT1G10370 60.9 1.7e-74 276.6
Cmo04g00339 . 6 216 Glutathione S-transferase Gene Family AT1G10370 55.5 3.2e-65 245.7
Cmo04g00338 . 5 223 Glutathione S-transferase Gene Family AT1G10360 58.4 1.1e-70 263.8
Cmo04g00339 . 5 216 Glutathione S-transferase Gene Family AT1G10360 52.0 4.7e-61 231.9
Cmo04g00688 . 1 205 Glutathione S-transferase Gene Family AT1G78380 72.2 1.6e-85 313.2
Cmo16g00499 . 1 187 Glutathione S-transferase Gene Family AT1G78380 61.5 2.2e-71 266.2
Cmo16g00500 . 1 105 Glutathione S-transferase Gene Family AT1G78380 66.7 1.3e-36 150.6
Cmo04g00688 . 1 206 Glutathione S-transferase Gene Family AT1G78370 65.5 7.0e-78 287.7
Cmo16g00499 . 1 188 Glutathione S-transferase Gene Family AT1G78370 58.9 5.9e-69 258.1
Cmo04g00687 . 8 213 Glutathione S-transferase Gene Family AT1G78370 51.5 1.8e-57 219.9
Cmo04g00688 . 1 212 Glutathione S-transferase Gene Family AT1G78340 62.0 1.1e-75 280.4
Cmo16g00499 . 1 189 Glutathione S-transferase Gene Family AT1G78340 61.4 4.8e-71 265.0
Cmo16g00500 . 1 96 Glutathione S-transferase Gene Family AT1G78340 68.8 3.5e-37 152.5
Cmo04g00688 . 1 206 Glutathione S-transferase Gene Family AT1G78320 52.9 3.0e-56 215.7
Cmo16g00499 . 1 184 Glutathione S-transferase Gene Family AT1G78320 50.7 4.2e-50 195.3
Cmo04g00688 . 1 206 Glutathione S-transferase Gene Family AT1G17180 66.0 4.0e-81 298.5
Cmo16g00499 . 1 187 Glutathione S-transferase Gene Family AT1G17180 63.9 4.3e-75 278.5
Cmo14g02022 . 129 284 Glutathione S-transferase Gene Family AT1G17180 51.6 1.3e-39 160.6
Cmo06g01186 . 8 162 Glutathione S-transferase Gene Family AT1G17180 50.6 1.2e-37 154.1
Cmo16g00500 . 1 105 Glutathione S-transferase Gene Family AT1G17180 64.8 2.1e-37 153.3
Cmo04g00688 . 1 206 Glutathione S-transferase Gene Family AT1G17190 57.5 7.8e-69 257.7
Cmo16g00499 . 3 190 Glutathione S-transferase Gene Family AT1G17190 53.6 1.3e-63 240.4
Cmo04g00688 . 3 205 Glutathione S-transferase Gene Family AT3G43800 55.1 2.4e-65 246.1
Cmo04g00688 . 3 205 Glutathione S-transferase Gene Family AT1G53680 58.0 1.2e-64 243.8
Cmo04g00687 . 4 220 Glutathione S-transferase Gene Family AT1G53680 51.8 4.4e-59 225.3
Cmo16g00499 . 4 185 Glutathione S-transferase Gene Family AT1G53680 52.7 3.1e-57 219.2
Cmo02g00647 . 51 221 Glutathione S-transferase Gene Family AT2G02390 65.5 6.8e-61 231.1
Cmo02g00645 . 50 217 Glutathione S-transferase Gene Family AT2G02390 66.1 2.9e-59 225.7
Cmo06g01161 . 60 226 Glutathione S-transferase Gene Family AT2G02390 53.9 2.3e-48 189.5
Cmo02g00647 . 10 220 Glutathione S-transferase Gene Family AT2G02380 62.6 4.8e-74 275.0
Cmo02g00645 . 9 215 Glutathione S-transferase Gene Family AT2G02380 61.4 9.4e-70 260.8
Cmo06g01161 . 17 225 Glutathione S-transferase Gene Family AT2G02380 55.0 1.4e-62 236.9
Cmo16g00640 . 1 237 Glutathione S-transferase Gene Family AT5G41210 68.8 9.5e-92 334.0
Cmo04g00779 . 1 229 Glutathione S-transferase Gene Family AT5G41210 69.4 5.8e-89 324.7
Cmo16g00640 . 1 237 Glutathione S-transferase Gene Family AT5G41240 67.5 1.1e-88 325.1
Cmo04g00779 . 1 229 Glutathione S-transferase Gene Family AT5G41240 67.7 1.2e-84 311.6
Cmo06g00337 . 10 236 Glutathione S-transferase Gene Family AT5G02780 68.9 3.6e-88 322.0
Cmo06g00338 . 4 232 Glutathione S-transferase Gene Family AT5G02780 68.0 9.3e-84 307.4
Cmo04g01303 . 76 295 Glutathione S-transferase Gene Family AT5G02780 64.4 9.0e-79 290.8
Cmo04g01303 . 39 293 Glutathione S-transferase Gene Family AT3G55040 59.0 2.1e-82 303.1
Cmo06g00337 . 5 237 Glutathione S-transferase Gene Family AT3G55040 62.2 6.9e-81 298.1
Cmo06g00338 . 3 230 Glutathione S-transferase Gene Family AT3G55040 57.2 1.1e-75 280.8
Cmo06g00337 . 10 236 Glutathione S-transferase Gene Family AT5G02790 69.2 5.4e-92 334.7
Cmo06g00338 . 4 232 Glutathione S-transferase Gene Family AT5G02790 69.1 2.0e-91 332.8
Cmo04g01303 . 62 295 Glutathione S-transferase Gene Family AT5G02790 62.1 8.6e-82 300.8
Cmo04g00243 . 1 211 Glutathione S-transferase Gene Family AT1G19570 67.5 3.9e-81 298.5
Cmo04g01285 . 1 211 Glutathione S-transferase Gene Family AT1G19570 65.1 1.8e-78 289.7
Cmo14g00834 . 66 274 Glutathione S-transferase Gene Family AT1G19570 61.4 7.8e-74 274.2
Cmo04g00242 . 32 242 Glutathione S-transferase Gene Family AT1G19570 62.3 1.6e-71 266.5
Cmo04g00245 . 1 98 Glutathione S-transferase Gene Family AT1G19570 76.5 4.3e-40 162.2
Cmo04g00243 . 256 465 Glutathione S-transferase Gene Family AT1G75270 73.0 2.5e-88 322.4
Cmo04g01285 . 1 212 Glutathione S-transferase Gene Family AT1G75270 70.9 1.8e-86 316.2
Cmo04g00242 . 32 243 Glutathione S-transferase Gene Family AT1G75270 65.3 1.3e-76 283.5
Cmo14g00834 . 66 274 Glutathione S-transferase Gene Family AT1G75270 63.3 2.4e-75 279.3
Cmo04g00245 . 1 98 Glutathione S-transferase Gene Family AT1G75270 77.6 1.5e-40 163.7
Cmo14g00834 . 55 276 Glutathione S-transferase Gene Family AT5G16710 77.0 1.2e-100 363.6
Cmo04g00243 . 256 463 Glutathione S-transferase Gene Family AT5G16710 60.1 1.0e-72 270.8
Cmo04g01285 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.1 1.3e-70 263.8
Cmo04g00242 . 20 241 Glutathione S-transferase Gene Family AT5G16710 52.3 3.4e-63 239.2
Cmo09g00759 CST 1 267 Glutathione S-transferase Gene Family AT1G77290 69.3 2.3e-107 386.0
Cmo01g01417 CST 1 270 Glutathione S-transferase Gene Family AT1G77290 67.8 2.8e-105 379.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007926 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00640 Cmo_Chr16 FPKM 1.86014 1.828405 1.034576 0.0 1.002229 1.085459 1.008713 0.0 0.0 0.0