Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00641 ATGGTTCAGTCGATTGCAGCAGCTTCTCTTTTTGGCCATCAGCTGCTATGTGGAGGAGCTTTTGTTAAGAACACGTCCAACAAGAGGAAGAACAGCAGGTCGCCGCCGTCCGAATTCATTGGAAAGCGGCTGATTTCGTCTCCTTTGTCAGTGAAGGCTTCATCATTGGAGGCGACAAAAGAAGCATATTCATTCAAAGAGGACAGAATACCAAAGGATTGGAACTATGATATTGATGCTGGCTTTGATAGAAAGCCAGGCTTATGGCCTCCAGAGAACAAAGCAGATAACCCTTCATTGCAGAATCCATTGCTTCGACAAGAAAGAATGGGCTGTGGTTGGTTGGGTGCCATTTTTGAGTGGGAGGGTGTGCTCATTGAGGACAATCCTGATATTGAGAAGCAGGCCTGGTTAGCTCTTTCTGAGGAAGAAGGAAAGTCACCTCCCCCAGCTTTTATCCTTAGAAGAATAGAAGGGATGAAGAATGAACAAGCCATTTCTGAAGTTCTTTGCTGGTCAAGAGATCCATCTCAGTTGAGAAGAATGGCTGCTAGGAAGGAAGAAATCTATCAAGCATTGCAGGGTGGAATTTACAGACTAAGAGCTGGATCAAAGGAGTTCGTGAATGTCCTGATGCATTACAAGATCCCCATGGCACTTGTTTCGACTCGTCCTAGAGAAGCTTTGGAATCAGCCATGGGAACGATCGGTATCGATGGCGATTTCAATGTGATTATAGCTGCGGAGGACGTTCATAGGGGAAAGCCTGATCCAGAAATGTTCGTTTATGCAGCACAGCTCTTGAACTTCATTCCTGAAAGGTGCATTGTGTTTGGGAATTCAAACCAAACTGTTGAGGCTGCTCATGATGCTCGGATGAAGTGTGTGGCTGTTGCGAGCAAGCATCCTGTGTATGAACTTGGGGCTGCAGACTTGGTGGTGAGATACCTTGACGAGCTGACGGTTGTCGATTTGAAGAATCTCGCCGATATCGAGTCCTCTGAGTTTGGTTCGGGAGAGGCGGAGTTGGAGATGGAGTTGGAGGAAGAGAATGAATCTCCATCAACCATGACAGCAGTTGATGATATGTTGTGGTGA 1098 46.45 MVQSIAAASLFGHQLLCGGAFVKNTSNKRKNSRSPPSEFIGKRLISSPLSVKASSLEATKEAYSFKEDRIPKDWNYDIDAGFDRKPGLWPPENKADNPSLQNPLLRQERMGCGWLGAIFEWEGVLIEDNPDIEKQAWLALSEEEGKSPPPAFILRRIEGMKNEQAISEVLCWSRDPSQLRRMAARKEEIYQALQGGIYRLRAGSKEFVNVLMHYKIPMALVSTRPREALESAMGTIGIDGDFNVIIAAEDVHRGKPDPEMFVYAAQLLNFIPERCIVFGNSNQTVEAAHDARMKCVAVASKHPVYELGAADLVVRYLDELTVVDLKNLADIESSEFGSGEAELEMELEEENESPSTMTAVDDMLW 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3162091 3163188 - CmoCh16G006410.1 Cmo16g00641 399676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00641 365 PANTHER 5-AMINO-6-(5-PHOSPHO-D-RIBITYLAMINO)URACIL PHOSPHATASE, CHLOROPLASTIC 2 364 - -
Cmo16g00641 365 SUPERFAMILY HAD-like 117 320 IPR036412 -
Cmo16g00641 365 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 213 298 IPR006439 -
Cmo16g00641 365 CDD HAD_BPGM-like 178 300 - -
Cmo16g00641 365 Gene3D Putative phosphatase; domain 2 127 200 IPR023198 -
Cmo16g00641 365 Pfam Haloacid dehalogenase-like hydrolase 121 298 IPR041492 -
Cmo16g00641 365 Gene3D - 117 314 IPR023214 -
Cmo16g00641 365 PANTHER BETA-PHOSPHOGLUCOMUTASE-LIKE ISOFORM X1 2 364 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00641 K22912 PYRP2; 5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase [EC:3.1.3.104] - csv:101210862 659.062
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01141 Cmo-Chr4:5824996 Cmo16g00641 Cmo-Chr16:3162091 1.48E-23 dispersed
Cmo16g00641 Cmo-Chr16:3162091 Cmo10g01241 Cmo-Chr10:12494728 9.26E-08 dispersed
Cmo16g00641 Cmo-Chr16:3162091 Cmo04g00781 Cmo-Chr4:3903609 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g323 . . Bda06g00102 . . Bpe07g00109 . . . Cmo16g00641 . . . . . Cpe14g00503 . . . . . . . . Cla07g00768 Cam07g0825 Cec07g0883 Cco07g0860 Clacu07g0804 Cmu07g0809 Cre07g1163 . . Cone6ag0778 Cone9ag0783 . . . Cme07g01627 . . . . . . . Bma12g00076 . . . . Cma16g00591 . . . . . . . . . . . . . . . . . . . . Chy07g01214 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007776 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00641 Cmo_Chr16 FPKM 18.063818 20.492512 15.914836 16.014336 11.792984 13.847204 12.120155 15.032657 13.303101 11.84935