Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00644 ATGATAAATTTTCCAAATCACAGTTTTATTCAGAGAAAGATTGCTAATGATGAACCACCCGAAGAAAATAGCCATCTACCACAAGAAGATGGCAAACTTAGTGCAGTTTCAACGAGTACTCAAACCACAGAGTCTGGAGCAACACTAAGACGAGGGCCTTGCCGGATTCACCAATTTGTATTTGTATCAATCTCAACTATGTGGATCTTTGGATGGACCGGACCATCTGGGTTCTCAGCCCGTTCTACCGCAGAAGAAGTCACAGAAGGAATTGATGGGAATGGCCTCACTGCTATTGTTACAGGAGCTTCAAGTGGTCTCGGTGAAGAGACGACACGTGTTCTTGCATTACGAGGAGTCTATGTCATTATGGCTGTAAGAAATGTTGAAGCAGGGAAAAAAGTAAAAGAAGCAGTACTGAAAGAATCCCCTTCAGCCAAAATTGATGTCATGGAGTTAGATCTTAGTTCAATGGAATCTGTAAGGAAATTTGCATCAGATTACATTGCATCAGGCCGTGCACTAAATATTCTAATGAACAATGCGGGCGTTATGGCGACTCCGTTTATGCTTTCGCATGATGGCATGGAGTTGCAGTTTGCAACAAACCACATAGGACATTTTCTTCTGACGAACCTTCTGCTGGAAACTATGAAAAAAACTGTGGTTGAATGCAAAAAGGAGGGAAGGATTGTCAATCTGTCGTCGGAGGGTCACCGATTGACATATGGCGAAGGAGTTCGTTTCGATAAAATCAATGACGAATCAGAGTACAGAACTATCTTTGCTTATGGACAATCAAAGCTTTCCAACATATTGCATGCCAAAGAGCTTGCCAGGCGGTTGAAGGAAGAAGGGGTGGAAATAACAGCCAACGCCCTTCATCCTGGAGCAATTGCTGCTACCAACCTACTACGCTTCCATGGTCTCATTAATGCTGTTGCTACTTCCATTGCTACATTTGTGCTTAAAAACGTCCGGCAGGGAGCGGCGACTCAGTGCTATGTAGCATTGAATCCCCAAGTCAAAGGGGTAAGTGGAGAGTATTTTGTGGATAGTAATATAGCCAACCCAACCAATCATGCCAAAGATATGGAATTGGCCAAGAAGCTGTGGGATTTCAGTATGGATCTAACTACCCCTAAATAA 1149 43.26 MINFPNHSFIQRKIANDEPPEENSHLPQEDGKLSAVSTSTQTTESGATLRRGPCRIHQFVFVSISTMWIFGWTGPSGFSARSTAEEVTEGIDGNGLTAIVTGASSGLGEETTRVLALRGVYVIMAVRNVEAGKKVKEAVLKESPSAKIDVMELDLSSMESVRKFASDYIASGRALNILMNNAGVMATPFMLSHDGMELQFATNHIGHFLLTNLLLETMKKTVVECKKEGRIVNLSSEGHRLTYGEGVRFDKINDESEYRTIFAYGQSKLSNILHAKELARRLKEEGVEITANALHPGAIAATNLLRFHGLINAVATSIATFVLKNVRQGAATQCYVALNPQVKGVSGEYFVDSNIANPTNHAKDMELAKKLWDFSMDLTTPK 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3175325 3180576 + CmoCh16G006440.1 Cmo16g00644 399679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00644 382 Pfam short chain dehydrogenase 97 238 IPR002347 -
Cmo16g00644 382 PRINTS Glucose/ribitol dehydrogenase family signature 287 304 IPR002347 -
Cmo16g00644 382 PRINTS Glucose/ribitol dehydrogenase family signature 173 184 IPR002347 -
Cmo16g00644 382 PRINTS Glucose/ribitol dehydrogenase family signature 264 283 IPR002347 -
Cmo16g00644 382 PRINTS Glucose/ribitol dehydrogenase family signature 97 114 IPR002347 -
Cmo16g00644 382 PRINTS Glucose/ribitol dehydrogenase family signature 223 239 IPR002347 -
Cmo16g00644 382 MobiDBLite consensus disorder prediction 30 48 - -
Cmo16g00644 382 PANTHER RETINOL DEHYDROGENASE 68 379 - -
Cmo16g00644 382 CDD retinol-DH_like_SDR_c_like 95 372 - -
Cmo16g00644 382 Gene3D - 90 381 - -
Cmo16g00644 382 MobiDBLite consensus disorder prediction 1 49 - -
Cmo16g00644 382 MobiDBLite consensus disorder prediction 14 28 - -
Cmo16g00644 382 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 95 356 IPR036291 -
Cmo16g00644 382 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 68 379 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00644 - - K19329 csv:101210378 564.688
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01090 Cmo-Chr2:6620441 Cmo16g00644 Cmo-Chr16:3175325 6.18E-161 dispersed
Cmo15g01146 Cmo-Chr15:8002367 Cmo16g00644 Cmo-Chr16:3175325 2.09E-161 dispersed
Cmo15g01147 Cmo-Chr15:8008905 Cmo16g00644 Cmo-Chr16:3175325 7.07E-156 dispersed
Cmo16g00644 Cmo-Chr16:3175325 Cmo04g00783 Cmo-Chr4:3927134 7.16E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g310 Blo02g01124 Blo03g00227 . Bda08g00502 Bpe05g00662 . . . . Cmo16g00644 . Cma15g01280 . Car15g01154 . Cpe14g00505 . . . . . . . . Cla07g00772 Cam07g0831 Cec07g0886 Cco07g0863 Clacu07g0808 Cmu07g0814 Cre07g1168 Cone8ag0615 . . Cone9ag0789 . Csa05g00120 Chy09g01373 Cme07g01630 . . . . . . Bma05g00836 . . . . . . . . . . Bhi12g00031 . . Lac11g0044 . . Lcy12g0041 Cla01g00106 Cam01g0105 Cec01g0106 Cco01g0107 Clacu01g0103 Cmu01g0104 Cre09g2402 Lsi09g00092 Csa04g00593 . Cme09g01920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00644 Cmo_Chr16 FPKM 8.779276 10.209605 22.091501 20.856743 28.272791 20.909441 26.270002 0.891186 0.528205 0.373502