Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00645 ATGTGTTCTCCTGATGGGCCTTCCTCCATTTTTGCCATTGGCCCATTTGCTCATGAAACACAGCTTGTCTCCACCTTTGAATCAACTGCTCCCTTCACTCCTGAGTCTACCCACTTGATTAGGCCTTCTTCCCCTGAAGTTCCTTTTGCTCAGGTTCTTCTACCTAGCCTACAGAAAGCTGAGTCTGATAATCAATGTTCATTTCCTAATGATTACTTCCAATCTTACCAATTCTATCCTTGCAGCCCGATTAGTCACCTCATATCGCCACGGCCAGTCATTTCTCGTTCTGGGTCGTCATCGCGTTTGCCTGATTGTGATTTTGCTTCCTCTGGCTCGCAGTTTTCGAATTTCCCATTAGAAGTTCCACCTACATTATTGGACCTTGACAAATGTTCCACTTATAGCTGGCAACAACGGCGAAGCACTGATTCTTACTCTCAAGATTCTATAGGATTCAAATCAACCGAAAGGAGGAAGCCTGTTGCTGCTAATCATAGATTCTCATTTGAGTTATCTGATGCAGATGCTTTATTAAGAAGCGTAGGAAGTAAGCCGCTGGAATCAAATGAACTGGAAGTTGCATCATCTCAATTACATGAACCATTTGAAACGGCTAAAGAAAATTCTCCTGCTGTCTGTCATACCTCAAATGGTACAGAAGAATATGCAAAAACAAACGGTGAACATGCACATCAGCATCAAGAACACCACTCCCTTACCCTTGGGTTTGTGAAGGAATTCAATTTTGATCATGGCAATGGATGTGATACTCTTTAA 780 42.56 MCSPDGPSSIFAIGPFAHETQLVSTFESTAPFTPESTHLIRPSSPEVPFAQVLLPSLQKAESDNQCSFPNDYFQSYQFYPCSPISHLISPRPVISRSGSSSRLPDCDFASSGSQFSNFPLEVPPTLLDLDKCSTYSWQQRRSTDSYSQDSIGFKSTERRKPVAANHRFSFELSDADALLRSVGSKPLESNELEVASSQLHEPFETAKENSPAVCHTSNGTEEYAKTNGEHAHQHQEHHSLTLGFVKEFNFDHGNGCDTL 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3181069 3181945 - CmoCh16G006450.1 Cmo16g00645 399680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00645 259 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 1 258 IPR040420 -
Cmo16g00645 259 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00645 - - - bhj:120075005 355.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00645 Cmo-Chr16:3181069 Cmo18g01287 Cmo-Chr18:12434906 2.44E-26 dispersed
Cmo16g00123 Cmo-Chr16:550650 Cmo16g00645 Cmo-Chr16:3181069 3.60E-27 wgd
Cmo16g00645 Cmo-Chr16:3181069 Cmo04g00784 Cmo-Chr4:3929395 3.39E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g303 . . . . . . . . . Cmo16g00645 . . . . . . . . . . . . . . Cla07g00774 Cam07g0832 Cec07g0887 Cco07g0864 Clacu07g0809 Cmu07g0815 Cre07g1169 Cone8ag0293 Cone12ag0299 . . . . . Cme07g01631 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01217 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010049 0 2 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00645 Cmo_Chr16 FPKM 7.708931 7.769088 26.415958 26.707432 21.152632 16.309635 19.928413 3.10148 2.76141 3.09028