Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g00647 | ATGGAAGAGTCTTCTAATTCTGGTGTTTATATAGAGAAAGAGCATATGTTCGACAAGGTTGTGACTCCAAGCGATGTGGGAAAATTGAATCGTTTAGTGATCCCTAAACAACATGCTGAAAAGTTCTTCCCTTTGGATTCTTCATCAACCGAAAAGGGTCTTCTTTTAAGCTTTGAAGATCGCTGTGGTAAGCTATGGCGGTTTCGTTACTCTTACTGGACTAGCAGCCAAAGCTATGTGATGACTAAAGGTTGGAGCCGCTTTGTTAAAGAGAAACGACTTGATGCTGGTGATATTGTCTCCTTTCAAAGAGGGGTTTGTAAAGATCGGTTTTTTATTGATTGGCGGCGCCGCCCTCCTCACACGGCGGTGGAGACAGCTTTTCATCACCATGGTGGTGGTGGTTGTGGCGGTGGTGGTGGTGGTTATGGTGGTGGTGGACAATTTCCGCCTTACCAATTTCAGCTTCACGGCCAGTGGAATCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGCCTTCCACTTGCAGCAGAATAATAGTGTTCATAATAATGTCAGCCTATTTCATACCACCTATAATCATCAACCGATCGGAGGCGGTGGTTGTGACGGTGGGGCGTCGGTCTTTTACGAATTGAGATCCCCGGCAGCACTGCCGGGAGTCGACGACGGTGGCGGTCATGGAATTGGGAAAGCTGCTGCAGCTAAGACATTGAGGCTATTTGGTGTCAATATGGAATGTGTAGTATCTGAAGATTCCGATGACGACGAGGGCGACAAAGTAACAACCTCGACTTCGACAACGTTGTCATCTCAATTCTGTGTTTATAACGGAATGCCGATGTCGATGTCGATGCCGACGAGCAATCCCGACGTACCGATCACCGACTTTTTCGAAAAAGGGAAGTCGTTAGATTTTGGCACTTGA | 933 | 47.27 | MEESSNSGVYIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKFFPLDSSSTEKGLLLSFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVCKDRFFIDWRRRPPHTAVETAFHHHGGGGCGGGGGGYGGGGQFPPYQFQLHGQWNPVATPLSLHRDHAFHLQQNNSVHNNVSLFHTTYNHQPIGGGGCDGGASVFYELRSPAALPGVDDGGGHGIGKAAAAKTLRLFGVNMECVVSEDSDDDEGDKVTTSTSTTLSSQFCVYNGMPMSMSMPTSNPDVPITDFFEKGKSLDFGT | 310 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 3189084 | 3190016 | - | CmoCh16G006470.1 | Cmo16g00647 | 399682 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g00647 | 310 | Pfam | B3 DNA binding domain | 17 | 118 | IPR003340 | GO:0003677 | |
Cmo16g00647 | 310 | CDD | B3_DNA | 15 | 104 | IPR003340 | GO:0003677 | |
Cmo16g00647 | 310 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 5 | 270 | IPR044800 | GO:0003700 | |
Cmo16g00647 | 310 | ProSiteProfiles | B3 DNA-binding domain profile. | 17 | 119 | IPR003340 | GO:0003677 | |
Cmo16g00647 | 310 | Gene3D | - | 10 | 132 | IPR015300 | - | |
Cmo16g00647 | 310 | SMART | B3_2 | 17 | 119 | IPR003340 | GO:0003677 | |
Cmo16g00647 | 310 | SUPERFAMILY | DNA-binding pseudobarrel domain | 14 | 110 | IPR015300 | - | |
Cmo16g00647 | 310 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 | 5 | 270 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo06g00500 | Cmo16g00647 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00500 | Cmo-Chr6:2406026 | Cmo16g00647 | Cmo-Chr16:3189084 | 3.38E-50 | dispersed | |
Cmo14g00327 | Cmo-Chr14:1506867 | Cmo16g00647 | Cmo-Chr16:3189084 | 2.88E-48 | dispersed | |
Cmo15g01401 | Cmo-Chr15:9532332 | Cmo16g00647 | Cmo-Chr16:3189084 | 3.15E-61 | dispersed | |
Cmo16g00647 | Cmo-Chr16:3189084 | Cmo17g00535 | Cmo-Chr17:5282653 | 4.83E-67 | dispersed | |
Cmo08g00001 | Cmo-Chr8:13601 | Cmo16g00647 | Cmo-Chr16:3189084 | 5.56E-67 | transposed | |
Cmo16g00647 | Cmo-Chr16:3189084 | Cmo04g00786 | Cmo-Chr4:3937439 | 1.18E-119 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11284 | PF02362 | B3 | 4.70E-27 | CL0405 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g00647 | - | - | bhj:120090999 | 358.607 |