Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00647 ATGGAAGAGTCTTCTAATTCTGGTGTTTATATAGAGAAAGAGCATATGTTCGACAAGGTTGTGACTCCAAGCGATGTGGGAAAATTGAATCGTTTAGTGATCCCTAAACAACATGCTGAAAAGTTCTTCCCTTTGGATTCTTCATCAACCGAAAAGGGTCTTCTTTTAAGCTTTGAAGATCGCTGTGGTAAGCTATGGCGGTTTCGTTACTCTTACTGGACTAGCAGCCAAAGCTATGTGATGACTAAAGGTTGGAGCCGCTTTGTTAAAGAGAAACGACTTGATGCTGGTGATATTGTCTCCTTTCAAAGAGGGGTTTGTAAAGATCGGTTTTTTATTGATTGGCGGCGCCGCCCTCCTCACACGGCGGTGGAGACAGCTTTTCATCACCATGGTGGTGGTGGTTGTGGCGGTGGTGGTGGTGGTTATGGTGGTGGTGGACAATTTCCGCCTTACCAATTTCAGCTTCACGGCCAGTGGAATCCAGTGGCCACACCCTTATCTTTACACAGGGACCACGCCTTCCACTTGCAGCAGAATAATAGTGTTCATAATAATGTCAGCCTATTTCATACCACCTATAATCATCAACCGATCGGAGGCGGTGGTTGTGACGGTGGGGCGTCGGTCTTTTACGAATTGAGATCCCCGGCAGCACTGCCGGGAGTCGACGACGGTGGCGGTCATGGAATTGGGAAAGCTGCTGCAGCTAAGACATTGAGGCTATTTGGTGTCAATATGGAATGTGTAGTATCTGAAGATTCCGATGACGACGAGGGCGACAAAGTAACAACCTCGACTTCGACAACGTTGTCATCTCAATTCTGTGTTTATAACGGAATGCCGATGTCGATGTCGATGCCGACGAGCAATCCCGACGTACCGATCACCGACTTTTTCGAAAAAGGGAAGTCGTTAGATTTTGGCACTTGA 933 47.27 MEESSNSGVYIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKFFPLDSSSTEKGLLLSFEDRCGKLWRFRYSYWTSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGVCKDRFFIDWRRRPPHTAVETAFHHHGGGGCGGGGGGYGGGGQFPPYQFQLHGQWNPVATPLSLHRDHAFHLQQNNSVHNNVSLFHTTYNHQPIGGGGCDGGASVFYELRSPAALPGVDDGGGHGIGKAAAAKTLRLFGVNMECVVSEDSDDDEGDKVTTSTSTTLSSQFCVYNGMPMSMSMPTSNPDVPITDFFEKGKSLDFGT 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3189084 3190016 - CmoCh16G006470.1 Cmo16g00647 399682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00647 310 Pfam B3 DNA binding domain 17 118 IPR003340 GO:0003677
Cmo16g00647 310 CDD B3_DNA 15 104 IPR003340 GO:0003677
Cmo16g00647 310 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 5 270 IPR044800 GO:0003700
Cmo16g00647 310 ProSiteProfiles B3 DNA-binding domain profile. 17 119 IPR003340 GO:0003677
Cmo16g00647 310 Gene3D - 10 132 IPR015300 -
Cmo16g00647 310 SMART B3_2 17 119 IPR003340 GO:0003677
Cmo16g00647 310 SUPERFAMILY DNA-binding pseudobarrel domain 14 110 IPR015300 -
Cmo16g00647 310 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 5 270 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00500 Cmo16g00647 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00500 Cmo-Chr6:2406026 Cmo16g00647 Cmo-Chr16:3189084 3.38E-50 dispersed
Cmo14g00327 Cmo-Chr14:1506867 Cmo16g00647 Cmo-Chr16:3189084 2.88E-48 dispersed
Cmo15g01401 Cmo-Chr15:9532332 Cmo16g00647 Cmo-Chr16:3189084 3.15E-61 dispersed
Cmo16g00647 Cmo-Chr16:3189084 Cmo17g00535 Cmo-Chr17:5282653 4.83E-67 dispersed
Cmo08g00001 Cmo-Chr8:13601 Cmo16g00647 Cmo-Chr16:3189084 5.56E-67 transposed
Cmo16g00647 Cmo-Chr16:3189084 Cmo04g00786 Cmo-Chr4:3937439 1.18E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11284 PF02362 B3 4.70E-27 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00647 - - bhj:120090999 358.607