Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00650 ATGGAGAACAACCAAGCTCCTTCTTTCATGCTTGCTGTCGCTATCGTGACAATTTATGCTGTGTTTTCAGCCATGGCTGAAGTTGATGATCAAAATTCCAAGGTTCATATTGTTTACTTGGGAGAAAGGCCGTATGATGATGTTAAGTTGACAACTCATTCTCACCATGAATTATTGGAAAGTGTTTTGAGAAGCAAGGAGAAGTCGTTGGAATCTATGGTGTATAGTTATAAACATGGCTTTTCTGGATTTGCCGCCAAGCTCACCAACTCTCAGGCTCAAAAGCTAGCACGATTCTGGCCGGAATCGGAGTCATTCAATGACAAAGGAATGGGGCCAATACCATCACGATGGAAAGGCATTTGCCAATTAGGGGAAGACTTCAATTCCTTTCATTGCAACAAAAAGGTCATTGGAGCGCGTTGGTTCGCTCGTGCCTTAATAGCCGACCATGGGGAGGAGGCGGTATTCAAGGATTACTTATCTGCACGAGACAACAAAGGACATGGAACCCACACAGCCAGCACAGCCGGGGGTGCATTTGTAAGAAACGTCAGCTACTTTGGCAATAGGCGCGGCACGTTGAGAGGTGGCGCACCATTGGCACGGTTGGCCATATACAAGGTCATATGGAGTGATAGACGCTTAGGGTCAGCGGCGGACATATTGAAGGGCATAGATGAGGCCATTCACGACGGTGTGGATGTGCTGTCTATGTCAATTGGCGGATCAATTCCTCTGCCTCCGGATGTCAGTGAATGGAACACGGTCGCTATTGGGTCGTTTCATGCCATTGCGAGGGGGGTTTCTGTTGTGTGTGCGGGCGGCAATGAAGGCTCAATTCAACAGACGGTGGTAAACGTCGCACCGTGGCTTTTTACCGTGGCTGCGAGTACTATCGATAGAGCCTTTCTTACTTCTATTACTACTCTTGGAGATAACGCTACTTATTTGGGACAAACCTTCTTGAAAAAGGACGTTGTCGGGAAGCTGGTGGTCATGGACAGAAGATGTGCAGGGCATTTGGGAAGTGATATCCCCACAGGTGGGAACGTGGTTCTTCTCTGCTTCATTGATTTAGCTATGAAGGCGGCTGCATCCAACCCGGTGATGCCGGTGAAGCAAGCAAAAGTGGTTGGAGTAATTTACGCCGGCCAACATACCGACATCTTGGGTCCTTGTGATGTTCCATGCATCCATGTGGATACCCACGTTGGCACTAAATTATTGACTTACATCCTCAGCGATGAGAAGGCATTGATAAGGTTGAAGGCCACACGAACCATAGTCGGCAAGCCCATATCATCTCGGATCGCTTATTTCTCATCCAGAGGTCCAAATTCTGTTTCCCCCGGAATCCTCAAGCCTGACATAGCCGCTCCCGGATCCAACATTATAGCTGCCGTTCCACCCAACCACAAGGGCGGTGACAAAGGGTTTGCAGCAATGTCAGGGACTTCCATGGCTACGCCTCATATCTCTGGTATCGTCGCTCTTATTAAATCCTTACGTCCTACTTGGTCACCGGCCGCCATTAAATCAGCCCTCATTACCACCGCTCGTGTAGAGGACCCATCAGGATTGCCAATTTTTGCTGAAGGAAGTCCACCGAAAGTGGCGGACCCATTTGACTACGGCGGCGGAGTGGTGGACGCCAACGCCGCCGTCGACCCAGGCCTGATCTACGATCTGGGAGCTACGGATTACATATATTATTACATGTGCAGCATGGGTTATACGAAGGCGGAAATTTCTCACCTATCGCAGCAGAAAATAGTGTGTCCATCGAAGAGGGCCTCTGTTTTGGATTTGAATCTGCCGACCATTACTGTACCGGCGCTGACAAACTCGACCACTGTGACTCGAACTGTGACGAATGTGGGGAACTTGACGGCGGTTTATAAGGCGGTGATTAAGGCTCCACCTGGGTCCAAGGTTAGAGTGAACCCCCGGGTGTTGGTGTTCAATTCCAATGTGAAGAAGATTTCGTTTAAGGTTAAGTTTTCGAGTACTCTTCAAAGGAACTATGGGTACTCGTTTGGAAGCTTGACATGGACCGATGGTGTTCATCTTGTTAAAAGCCCTTTGTCTGTGCGTTTTGATTTCTTTTGA 2112 48.67 MENNQAPSFMLAVAIVTIYAVFSAMAEVDDQNSKVHIVYLGERPYDDVKLTTHSHHELLESVLRSKEKSLESMVYSYKHGFSGFAAKLTNSQAQKLARFWPESESFNDKGMGPIPSRWKGICQLGEDFNSFHCNKKVIGARWFARALIADHGEEAVFKDYLSARDNKGHGTHTASTAGGAFVRNVSYFGNRRGTLRGGAPLARLAIYKVIWSDRRLGSAADILKGIDEAIHDGVDVLSMSIGGSIPLPPDVSEWNTVAIGSFHAIARGVSVVCAGGNEGSIQQTVVNVAPWLFTVAASTIDRAFLTSITTLGDNATYLGQTFLKKDVVGKLVVMDRRCAGHLGSDIPTGGNVVLLCFIDLAMKAAASNPVMPVKQAKVVGVIYAGQHTDILGPCDVPCIHVDTHVGTKLLTYILSDEKALIRLKATRTIVGKPISSRIAYFSSRGPNSVSPGILKPDIAAPGSNIIAAVPPNHKGGDKGFAAMSGTSMATPHISGIVALIKSLRPTWSPAAIKSALITTARVEDPSGLPIFAEGSPPKVADPFDYGGGVVDANAAVDPGLIYDLGATDYIYYYMCSMGYTKAEISHLSQQKIVCPSKRASVLDLNLPTITVPALTNSTTVTRTVTNVGNLTAVYKAVIKAPPGSKVRVNPRVLVFNSNVKKISFKVKFSSTLQRNYGYSFGSLTWTDGVHLVKSPLSVRFDFF 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3205298 3210300 - CmoCh16G006500.1 Cmo16g00650 399685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00650 703 Gene3D Peptidase S8/S53 domain 100 569 IPR036852 GO:0004252|GO:0006508
Cmo16g00650 703 Pfam Subtilase family 161 523 IPR000209 GO:0006508|GO:0008236
Cmo16g00650 703 ProSitePatterns Serine proteases, subtilase family, serine active site. 485 495 IPR023828 -
Cmo16g00650 703 ProSiteProfiles Serine proteases, subtilase domain profile. 118 556 - -
Cmo16g00650 703 PANTHER PEPTIDASE S8 23 97 - -
Cmo16g00650 703 PRINTS Subtilisin serine protease family (S8) signature 484 500 IPR015500 -
Cmo16g00650 703 PRINTS Subtilisin serine protease family (S8) signature 165 178 IPR015500 -
Cmo16g00650 703 SUPERFAMILY Subtilisin-like 128 560 IPR036852 GO:0004252|GO:0006508
Cmo16g00650 703 Gene3D - 574 700 - -
Cmo16g00650 703 PANTHER PEPTIDASE S8 99 699 - -
Cmo16g00650 703 Gene3D - 301 430 - -
Cmo16g00650 703 CDD PA_subtilisin_like 310 416 - -
Cmo16g00650 703 CDD Peptidases_S8_3 99 520 IPR034197 -
Cmo16g00650 703 Pfam Peptidase inhibitor I9 35 98 IPR010259 -
Cmo16g00650 703 PANTHER SUBTILISIN-LIKE PROTEASE SBT3.1-RELATED 23 97 - -
Cmo16g00650 703 PANTHER SUBTILISIN-LIKE PROTEASE SBT3.1-RELATED 99 699 - -
Cmo16g00650 703 Pfam Fibronectin type-III domain 603 698 IPR041469 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00650 - - - csv:101219903 838.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00650 Cmo-Chr16:3205298 Cmo16g01045 Cmo-Chr16:7296692 1.04E-46 dispersed
Cmo16g00652 Cmo-Chr16:3221592 Cmo16g00650 Cmo-Chr16:3205298 5.43E-27 dispersed
Cmo16g00650 Cmo-Chr16:3205298 Cmo16g00653 Cmo-Chr16:3225710 5.24E-147 proximal
Cmo16g00649 Cmo-Chr16:3197033 Cmo16g00650 Cmo-Chr16:3205298 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g266 . . Bda06g01090 . . . . . . Cmo16g00650 . . Car02g00624 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001239 3 1 3 3 2 1 1 1 1 1 1 1 2 1 1 4 1 1 2 1 1 2 2 5 9 1 5 5 5 6 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00650 Cmo_Chr16 FPKM 8.803164 9.918751 15.597514 15.099727 21.914713 24.05661 25.168287 14.587733 13.996647 15.578708