Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00656 ATGGGGAGATGGCACGTTTCATCTAATGCTTCCATTTTAGATTGCAATAAAGATGTAGATCCTAATCCTAGTAATGGCTGTTGCATTGCTTCGGATTGTTTGGTAGAGAGGAGTTATGAAAATGTTGATTATGATGATTGCAAGGCGAGAATTAGATGCTATTTTGAGAAAATTCTTTGGGTTTTTTTAAAGGAAATTGGTCGTAGAGGATTTGTTAGGCCACTGCCTGCGTTAATAGGTGAAGGGGGAGCTTTGGATTTGTTTGAACTGTTCTTGGTAGTAAGAGATAAAGGAGGTTCTCAAGTGGTTTCAGAGAAGAAACTATGGTCTTCAGTGGTTGTCGAATTAGGTTTGGATCTTGGGCTTTCGGCGTCGGTGAAATTGATTTATTCCAAGTACTTAAGTGATCTAGAGAAATGGCTTATGGTGAGATGTGGAGACACAAAACTGGAAAATGGGAGCTCTGATTATTGCTACAAGAAAAGTTCTCCATTTTTATCGGAACTCGGGGCAAAGATTAACGGTATGTTGTATGGTGTGCCGAGACAAAATAGCATATATGATGAATGTTTTGGATTCAAATCTAACAAACAGAATGGGAACGTTAATGTTGCTGCTGCTGCTGCAGTGGAGAAGGAAATAAAATTCCCTGAAATAAAGAAGAAAGAGCACGATCTCCATGGGGATGTTACATCAATTCAACAAGATTGTACAGAGACGCATCCAATCCATGTTATTGAAGATGGTCAAAGTTTGGATGCTGTTAATGTTGAAGCTGAAATAGAATCTCTTGGGAAATATCGAGAATCGTTATTACGAATGCTGAAGTGGGTGAGAAAGACTGCGAAGCATCCTGAAGATCCATTAAATGGTACAATACCGGGGACATCTAGGTGGAAAGGTTACTCGAGCGACGATGCATTATGGCTTCAAGTAATCAGGGCAAAGGATGCTCTTCTAATTAGGAAGGGTGTTGACAAAATTGCTGAGAAACGTCTGTTAATACAGAAGAAAGTAAAGATGCATCCATCCATTTATGAGGATAATATTGATAACCATCACCTCTCTACAGAAAGGATAAGTTGCAGCAAAAGATCTAAAGCTTTGACTGAGTCCGTACTCGCCCCGTGTTCTAATTCTTGTCCAACCGTTCGAAGTAATTGTATTAGTAGTCTAACAACAGAAGTTGGAAAGGGACTCAAGAATCAAGCAGTTTTGAATGGTGATATACCATCTGAAATGGAAGACGATCATCCGAATGAAGATTCAGCTGAGGAGACGGTTCCCGTGGGTGCTGTATGTCAAGCAGATTTACCTGAATGGACTGGTAATAATTCTGATAGTGACTCTAAATGGCTAGGGACACGGTCGTGGCCTCTTCAACACAGAAATAGTAATTCCGTACGTGATAGACGCGCCATTGGCAGAGGGAGACCGGATTCATGTGGCTGCCAATTTCCAGGTTCGGTTGAATGTTTTAGATTTCACATAGCTGAAGCAAGGATGAGATTAAAGCTCGAGCTTGGCTCGACATTCTTTGCATGGAGATTTCATCAAATGGGGGAGGAAATATCTCTGCAATGGACAGTTGAAGAGGAAAAGAGATTCAAGGAGTTGGCTATGTCAGGTTTCAACAATCATAATCGGTGCTTTTGGGACTATTCCTTGAGATGGTTTCCTATGAAATCAAGGAAAAATCTGATAAGCTATTACTTCAATGTGTTTCTTTTACGGCTGAGAAGCTATCAGAATCGCGTAACTCCGAATAGCATCGATAGCGACGATGAAGATTTTGAGTTCGGTCGTGTTAGTGGTGGATTTGGGGACAAGGCAATGGAAATTTTAGGCTCAAATTCTTTAGAATGTTCTATAAACAGACAGGTCACAGATGTGGAGTAG 1899 40.65 MGRWHVSSNASILDCNKDVDPNPSNGCCIASDCLVERSYENVDYDDCKARIRCYFEKILWVFLKEIGRRGFVRPLPALIGEGGALDLFELFLVVRDKGGSQVVSEKKLWSSVVVELGLDLGLSASVKLIYSKYLSDLEKWLMVRCGDTKLENGSSDYCYKKSSPFLSELGAKINGMLYGVPRQNSIYDECFGFKSNKQNGNVNVAAAAAVEKEIKFPEIKKKEHDLHGDVTSIQQDCTETHPIHVIEDGQSLDAVNVEAEIESLGKYRESLLRMLKWVRKTAKHPEDPLNGTIPGTSRWKGYSSDDALWLQVIRAKDALLIRKGVDKIAEKRLLIQKKVKMHPSIYEDNIDNHHLSTERISCSKRSKALTESVLAPCSNSCPTVRSNCISSLTTEVGKGLKNQAVLNGDIPSEMEDDHPNEDSAEETVPVGAVCQADLPEWTGNNSDSDSKWLGTRSWPLQHRNSNSVRDRRAIGRGRPDSCGCQFPGSVECFRFHIAEARMRLKLELGSTFFAWRFHQMGEEISLQWTVEEEKRFKELAMSGFNNHNRCFWDYSLRWFPMKSRKNLISYYFNVFLLRLRSYQNRVTPNSIDSDDEDFEFGRVSGGFGDKAMEILGSNSLECSINRQVTDVE 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3238168 3243114 - CmoCh16G006560.1 Cmo16g00656 399691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00656 632 CDD ARID 55 138 - -
Cmo16g00656 632 ProSiteProfiles ARID domain profile. 49 142 IPR001606 GO:0003677
Cmo16g00656 632 SMART ARID_2 46 138 - -
Cmo16g00656 632 Pfam ARID/BRIGHT DNA binding domain 69 138 IPR001606 GO:0003677
Cmo16g00656 632 Gene3D - 40 149 IPR036431 GO:0003677
Cmo16g00656 632 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 631 - -
Cmo16g00656 632 SUPERFAMILY ARID-like 50 142 IPR036431 GO:0003677
Cmo16g00656 632 SMART bright_3 49 143 IPR001606 GO:0003677
Cmo16g00656 632 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 631 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00656 - - - cmos:111437591 1007.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g02110 Cmo-Chr14:15280250 Cmo16g00656 Cmo-Chr16:3238168 9.13E-10 dispersed
Cmo16g00656 Cmo-Chr16:3238168 Cmo17g00419 Cmo-Chr17:2803478 2.44E-65 dispersed
Cmo16g00656 Cmo-Chr16:3238168 Cmo08g00874 Cmo-Chr8:5649026 3.13E-66 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g13 . . . . . . Bma07g01663 . . Cmo16g00656 . . . . . Cpe14g00511 . . . . . . . . Cla07g00785 Cam07g0845 Cec07g0897 Cco07g0880 Clacu07g0820 Cmu07g0824 Cre07g1181 . . Cone6ag0789 Cone9ag0791 . . . Cme07g01639 . . . Bda09g00033 . . . . . . . . Cma16g00601 . . . . . . . . . . . . . . . . . . . . Chy07g01224 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008781 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 2 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11285 PF01388 ARID 9.50E-08 CL0123 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00656 Cmo_Chr16 FPKM 4.588268 6.471232 14.96834 17.831615 13.841961 12.39233 13.223897 11.159554 10.641323 11.214833