Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00658 ATGGGGAACTGCTTATTCGGCGGTGGGTCTGGTGAGATTCAGGGGAAAATCAAGGTAATCACGTCCAATGGCGGGATTATGGAGTTGGGTTCTCCGATTACCGTCGGGTGCATCGCCGATGAGTTTCCTGGCTATGGAATATTCAAAAGCCAAGATCTTTTTTGGAACCCATTACCGCACAACGAGGAGCTGCTTCCGGGGAAATCCTACTACTTGCTTCAGAGAAACAGGGGAAGAAACAGAGGAGAGACAGAAGAAGGGGAAATGGGAATGATAAGGGCGCGTGAGGGGCACGTGAGGTCGAATAGTGTACCGGAGGCGACGGCGGCGGCGGCGGCGGGTATGGCGCCGTACAGAATGTCGTTTGATTATCAGGGGGTTTTGAGGAGGTCGCAGACGGAGGTTTTTTCGAGGAGCAGTGAGAAGAACGGCGGGGGGGTTTGGAAGGTGAAATTGGTGATTAGTCCGAAGCGATTGGTGGAGATTTTGGAGGAGGAAGGTCACACTCAGGAGTTGATTGAGAGCGTAAGGACTGTGGCTAAATGTGGAAGTACTAGCACCAGCAGCAGCTTTTCGTCGTCCATGGCGTTTTCCGATCACTGGAGTTTGTCCTCCACCACCGCCAATGCTACTCCGAGCGCTTCCTCCAAAAGTGGCGGCTTGCCGGAGATCTAA 675 53.19 MGNCLFGGGSGEIQGKIKVITSNGGIMELGSPITVGCIADEFPGYGIFKSQDLFWNPLPHNEELLPGKSYYLLQRNRGRNRGETEEGEMGMIRAREGHVRSNSVPEATAAAAAGMAPYRMSFDYQGVLRRSQTEVFSRSSEKNGGGVWKVKLVISPKRLVEILEEEGHTQELIESVRTVAKCGSTSTSSSFSSSMAFSDHWSLSSTTANATPSASSKSGGLPEI 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3250160 3250834 + CmoCh16G006580.1 Cmo16g00658 399693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00658 224 Pfam PADRE domain 1 171 IPR025322 -
Cmo16g00658 224 MobiDBLite consensus disorder prediction 205 224 - -
Cmo16g00658 224 PANTHER PLASTID MOVEMENT IMPAIRED PROTEIN-RELATED 1 208 - -
Cmo16g00658 224 PANTHER DUF4228 DOMAIN PROTEIN 1 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00658 - - - cmos:111437546 401.749
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo15g01132 Cmo16g00658 CCT
Cmo02g01473 Cmo16g00658 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00971 Cmo-Chr6:7641394 Cmo16g00658 Cmo-Chr16:3250160 2.12E-36 dispersed
Cmo16g00588 Cmo-Chr16:2839511 Cmo16g00658 Cmo-Chr16:3250160 1.91E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g1 . . . Bda08g00515 . Bpe07g00104 . Bma14g00608 . Cmo16g00658 Cma02g01438 . Car02g01208 . . . Cpe05g00646 . . . . . . . Cla07g00786 Cam07g0848 Cec07g0901 Cco07g0883 Clacu07g0823 Cmu07g0826 Cre07g1184 . . . . . Csa05g00266 . . . . Bda07g00484 . . Bpe11g00661 . Bma12g00073 . Cmo02g01473 Cmo15g01132 . Cma16g00602 Car06g00910 . . Cpe13g00146 Bhi12g00184 . . . . . . Cla01g00250 Cam01g0255 Cec01g0247 Cco01g0261 Clacu01g0253 Cmu01g0243 Cre09g2266 Lsi09g00241 . Chy07g01225 .
Vvi2g253 . . Bda06g01087 Bda08g00753 Bpe05g00385 . . . . Cmo16g00658 . . . . . Cpe14g00513 . . . . . . . . Cla07g00788 Cam07g0851 Cec07g0904 Cco07g0886 Clacu07g0826 Cmu07g0829 Cre07g1187 Cone8ag0557 Cone12ag0556 . . . . . Cme07g01643 . . . . . . Bma05g00535 Bma12g00421 . . . . Cma16g00604 . . . . . . . . . . . . . . . . . . . Csa04g00584 Chy07g01227 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006548 2 1 1 2 2 1 2 1 1 1 1 1 2 1 0 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00658 Cmo_Chr16 FPKM 110.100426 111.696083 144.547272 158.323425 130.418488 94.595612 133.809174 211.822388 258.716644 318.210236