Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00660 ATGAGAACACTTTGTGACGCTTGTGAAAGCGCTGCTGCTATCGTCTTTTGCGCTGCTGACGAAGCCGCGCTTTGCCGCTCTTGTGACGAGAAGGTCCATATGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAGTCCGAGTGACGTTCCCCGTTGTGATATATGCGAGAACGCACCTGGTAGGGAGGTCCTTCCTTTTGTTTTTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTATGTTTGCAATGTGACATGATCGTTCACGTTGGAGGGAAACTGTCACGACCCCAAATTAAGCCGTGA 318 48.43 MRTLCDACESAAAIVFCAADEAALCRSCDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPGREVLPFVFAFFYCEIDGSSLCLQCDMIVHVGGKLSRPQIKP 105
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3268929 3271214 + CmoCh16G006600.1 Cmo16g00660 399695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00660 105 CDD Bbox1_BBX-like 4 47 - -
Cmo16g00660 105 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Cmo16g00660 105 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 98 - -
Cmo16g00660 105 Gene3D Classic Zinc Finger 2 100 - -
Cmo16g00660 105 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cmo16g00660 105 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 98 - -
Cmo16g00660 105 SMART bboxneu5 1 47 IPR000315 GO:0008270
Cmo16g00660 105 SMART bboxneu5 51 101 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00440 Cmo-Chr7:2026405 Cmo16g00660 Cmo-Chr16:3268929 3.81E-47 dispersed
Cmo16g00660 Cmo-Chr16:3268929 Cmo16g00458 Cmo-Chr16:2198493 8.26E-06 dispersed
Cmo16g00660 Cmo-Chr16:3268929 Cmo04g00794 Cmo-Chr4:3978002 5.37E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11286 PF00643 zf-B_box 3.40E-06 No_clan Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00660 - - cmos:111437606 197.978