Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00663 ATGTGGCGGCGGAGTTTCAGCAGCGCCGCCGGATCTGCGGCCGTCTTGAAGAATCAGAAATGGGATGCATTGGTAATCGGCGGTGGCCACAATGGCCTTACCGCTGCTGCGTACCTAGCTCGTGGCGGTCTCTCCGTCGCAGTACTTGAGCGACGCCATGTACTCGGTGGCGCTGCCGTGACTGAAGAACTCATCCCCGGCTTTAAATTCTCCCGGTGCAGTTACCTACAGAGTCTCCTCCGTCCATCTGTCATCAAGGAATTAGAGCTAGCGAGGCACGGATTAAAGCTTTTAAAGAGGAATCCATCATCTTTTACTCCTTGTTTGGATGGGCGATATCTTTTGTTAGGTCCTAATAAGGATCTTAATTATTCAGAAATTTCCAAGTTCTCCAAACGAGACGCTGACGCTTATCCCAGATATGAGGCTCAATTAGAAAGGTTCTGTAAATTCATGGATCTTCTTCTGGACTCACCCACGCCAGAGATCCTGCATGACATTTCATCTCTTAAACATCGGCTTGGGGATAAGTTAAAAAATTCAGCTTTTTGGGCAAAATGTCTTCGAAGCGCTCTTTCTCTGGGGCAAAAGGATATGGTAGACTTCATGGACCTTCTGTTTTCTCCGTCTTCGAAGGTTTTAAACAATTGGTTTGAGGGAGATGTTCTGAAAGCTACACTTGCAACAGATGCTATCATAGGGACGGTGGCAAGTGTGCACACACCTGGTAGTGGATATGTGCTACTTCATCATGTGATGGGTGAAACTGATGGGGATCGTGGTATCTGGTCGTATGTTGAAGGTGGTATGGGCTCTGTATCAATGGCCATTAGTAATGCAGCAAAGGAAGCAGGCGCTCATATTATCACAAATGCTGAGGTGTCAGAATTGATGGTTGAGGACTCTGGTAGAGTAAAAGGGGTGCGTCTAGCCGATGGCACATGTGTGCAAGCCTCAACTGTTCTGTCAAATGCAACGCCTTATAAAACATTTATGGAACTAATGCCTCCTGATATACTTCCTGATGAGTTTCTACGCGCTATTAAACATGTTGATTACCGATCTGCAACTACCAAAATTAACTTAGCAGTTGACAAAATACCCCACTTTCCTTGTTGTAAGTTGAGCCCAGCTGAAGCAGAACATCAGCTCGTTGGCACCATTCATATTGGTGCAGAAAGTATGGAGGAGATTGACTTGGCTTGTCAAGATGCTTCGAATGGCTTACCGTCTAGAAGACCTATTATTGAGATGACAATCCCCTCTATACTAGACCGGACAATATCTCCTCCAGGCAAGCATGTGATCAATTTATTTATTCAGTACACTCCATACAAACCATCCGATGGTTCTTGGGAAGATCCTGTTTATAGGGAATCGTTTGCTCAAAGATGTTTTGCTTTGATTGATGAATATGCACCTCAGTTTAGCTCATCAGTTATTGGTTATGACATGTTAACTCCCCCTGATCTTGAAAGAGAAATTGGTCTGACAGGAGGGAATATCTTCCATGGCGCCATGGGGTTGGACTCGCTCTTCCTTTTGCGGCCAGTTAAAGGATGGTCAAATTATAGAAGTCCAGTGAAAGGGCTGTATTTGTGTGGAAGTGGTGCCCATCCTGGAGGTGGTGTCATGGGGGCGCCTGGTCGTAATGCTGCAAACTTGTTGAACGGGTTAAAAGTATTTTCAGTCAATGAAAAAACCAAAAAAAGCTTTGCGGGCAGAGGCCTTTGGGTGCCCCCTCATGTTATGAATTGGGGCCTCACAATCTCCTGCCGATATGCTATTCTCTCATGCCTTTCTTCGTTCATGGTTCGATATTTTGGTGTCCTAGGGTTCACTGGTCCAGTAGCGCTCTCCATAAGCTCTAGGTTAGCGTCTTCCCTATCCTTTACCACGACGTTTGAGATCGACCCTACTGAAGATTTTGCTTATCGGACCGCCGTGTACTCTCTATTTCACCAATGA 1968 45.78 MWRRSFSSAAGSAAVLKNQKWDALVIGGGHNGLTAAAYLARGGLSVAVLERRHVLGGAAVTEELIPGFKFSRCSYLQSLLRPSVIKELELARHGLKLLKRNPSSFTPCLDGRYLLLGPNKDLNYSEISKFSKRDADAYPRYEAQLERFCKFMDLLLDSPTPEILHDISSLKHRLGDKLKNSAFWAKCLRSALSLGQKDMVDFMDLLFSPSSKVLNNWFEGDVLKATLATDAIIGTVASVHTPGSGYVLLHHVMGETDGDRGIWSYVEGGMGSVSMAISNAAKEAGAHIITNAEVSELMVEDSGRVKGVRLADGTCVQASTVLSNATPYKTFMELMPPDILPDEFLRAIKHVDYRSATTKINLAVDKIPHFPCCKLSPAEAEHQLVGTIHIGAESMEEIDLACQDASNGLPSRRPIIEMTIPSILDRTISPPGKHVINLFIQYTPYKPSDGSWEDPVYRESFAQRCFALIDEYAPQFSSSVIGYDMLTPPDLEREIGLTGGNIFHGAMGLDSLFLLRPVKGWSNYRSPVKGLYLCGSGAHPGGGVMGAPGRNAANLLNGLKVFSVNEKTKKSFAGRGLWVPPHVMNWGLTISCRYAILSCLSSFMVRYFGVLGFTGPVALSISSRLASSLSFTTTFEIDPTEDFAYRTAVYSLFHQ 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3287498 3302219 - CmoCh16G006630.1 Cmo16g00663 399698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00663 655 SUPERFAMILY FAD/NAD(P)-binding domain 19 438 IPR036188 -
Cmo16g00663 655 Pfam Flavin containing amine oxidoreductase 32 368 IPR002937 GO:0016491
Cmo16g00663 655 Gene3D - 20 111 IPR036188 -
Cmo16g00663 655 PANTHER PHYTOENE DEHYDROGENASE 1 555 - -
Cmo16g00663 655 Gene3D - 224 367 IPR036188 -
Cmo16g00663 655 PANTHER FAD/NAD(P)-BINDING DOMAIN-CONTAINING PROTEIN-RELATED 1 555 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00663 - - - csv:101207025 1048.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g00779 Cmo16g00663 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00779 Cmo-Chr3:6436890 Cmo16g00663 Cmo-Chr16:3287498 5.17E-49 transposed
Cmo06g00553 Cmo-Chr6:2674464 Cmo16g00663 Cmo-Chr16:3287498 1.06E-12 transposed
Cmo16g00833 Cmo-Chr16:4382286 Cmo16g00663 Cmo-Chr16:3287498 8.31E-11 transposed
Cmo16g00663 Cmo-Chr16:3287498 Cmo03g00778 Cmo-Chr3:6432371 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g970 . . . . . . Bma09g00076 . . Cmo16g00663 Cma03g00750 . Car03g00685 . Sed14g1114 . . Bhi03g01291 Tan03g1978 Cmetu07g0294 . Hepe04g1510 . . . . . . . . . . . . . Lsi01g00676 . . . . . Bda11g01868 . . . . . . Cmo03g00779 . Cma16g00608 . . . . . . . . . . . . Cla07g00795 Cam07g0860 Cec07g0911 Cco07g0893 Clacu07g0834 Cmu07g0838 Cre07g1195 Lsi07g00266 . Chy02g00651 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001846 2 2 2 3 2 3 2 4 3 2 2 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 1 2 4 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00663 Cmo_Chr16 FPKM 11.623786 11.67318 12.130038 13.788606 9.336007 6.896608 8.154341 13.126126 11.66178 12.192229