Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g00672 | ATGTCGTTTAAAAGTTTTGTTAGAGAGCTGCGAGAGATTAAAGATGGAATTGGGAGCATTTCGAAACGAGGAGAAGAAGGGAGTAGGCATTGGCGCAACCGAACAATGTCACACATTGCACCTGATCAAGAAGAACATTCTCCATTGGAGTTAATTCAGCAAGGTCGATGGGCAAATCTACCCCCCGAATTACTTCTAGACATCATCCGGAGAGTGGAAGAGAGTGAAACCTCATGGCCTTCTCGAGCTATAGTCGTTTTTTGTGCTTCAGTTTGTAGGTCTTGGAGGGCCATTACAAAGGAGATTATCAGAACTCCTGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCTCGGGAGTCTCCATTTCAGTGCTTTATCAGAAGGGATAGAGCAACTTCGACCTACCTCCTGTACTTCGGTTTGGCTCCTTCGGAGGACGAAAAACATAAACTGTTGTTAGCAGCCAAGAGGGTCAGAAGAGCAGCCGGTACTGACTTTATCATATCTTTAGTAGCTGATGATTTTTCTCGAGCAAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGTACGAAGTTCTCGATTTATGATAGCCAGCCTCCTTGTGACCCTGCAGCTCAGCAAAGTAGTCGATCAAGCCGTAGATTTCACTCTAAGCAAGTCTCTCCTAGGGTACCTGCATGTAACTACAGTGTAGGTACAGTTTCTTATGAACTTAATGTTCTTCGCACTAGAGGTCCTCGGAGGATGCAGTGCGTCATGCAAACGATTCCAGTTTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCTACTTCATTCACACACTCTGATGACCACCTTTCTATCGAGTCCGATTCTATGAGAAAGGATTCAGGCAAGGACTTCGGCTCAAAGACCCCATCAGAACCAGCAGTTCAGGGATCAGATGAATCGTTAGTGCTTAAAAACAAGGCACCAAGATGGCACGAGCAGCTGCAGTGCTGGTGCCTAAATTTCAGAGGACGTGTGACGGTGGCATCCGTTAAGAACTTCCAACTCGTTGCAGCTGTTGATGAATCTCACAATGTTTCAGTGGAAGAGCAAGAGAAGGTAATTCTCCAGTTCGGAAAAATTGGAAAAGACATCTTCACCATGGATTACCACTATCCGCTCTCTGCATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGCGAATGA | 1242 | 46.05 | MSFKSFVRELREIKDGIGSISKRGEEGSRHWRNRTMSHIAPDQEEHSPLELIQQGRWANLPPELLLDIIRRVEESETSWPSRAIVVFCASVCRSWRAITKEIIRTPEQCGRLTFPISLKQPGPRESPFQCFIRRDRATSTYLLYFGLAPSEDEKHKLLLAAKRVRRAAGTDFIISLVADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAAQQSSRSSRRFHSKQVSPRVPACNYSVGTVSYELNVLRTRGPRRMQCVMQTIPVSSIQEGGTAPTPTSFTHSDDHLSIESDSMRKDSGKDFGSKTPSEPAVQGSDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDESHNVSVEEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 3330233 | 3332397 | + | CmoCh16G006720.1 | Cmo16g00672 | 399707 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g00672 | 413 | MobiDBLite | consensus disorder prediction | 208 | 228 | - | - | |
Cmo16g00672 | 413 | MobiDBLite | consensus disorder prediction | 270 | 286 | - | - | |
Cmo16g00672 | 413 | SUPERFAMILY | Tubby C-terminal domain-like | 106 | 413 | IPR025659 | - | |
Cmo16g00672 | 413 | PRINTS | Tubby superfamily signature | 172 | 188 | IPR000007 | - | |
Cmo16g00672 | 413 | PRINTS | Tubby superfamily signature | 188 | 212 | IPR000007 | - | |
Cmo16g00672 | 413 | PRINTS | Tubby superfamily signature | 237 | 264 | IPR000007 | - | |
Cmo16g00672 | 413 | PRINTS | Tubby superfamily signature | 323 | 340 | IPR000007 | - | |
Cmo16g00672 | 413 | PRINTS | Tubby superfamily signature | 341 | 357 | IPR000007 | - | |
Cmo16g00672 | 413 | PRINTS | Tubby superfamily signature | 370 | 389 | IPR000007 | - | |
Cmo16g00672 | 413 | PRINTS | Tubby superfamily signature | 391 | 413 | IPR000007 | - | |
Cmo16g00672 | 413 | MobiDBLite | consensus disorder prediction | 209 | 224 | - | - | |
Cmo16g00672 | 413 | PANTHER | TUBBY-RELATED | 1 | 413 | - | - | |
Cmo16g00672 | 413 | Gene3D | Tubby Protein; Chain A | 115 | 413 | IPR025659 | - | |
Cmo16g00672 | 413 | Pfam | Tub family | 118 | 408 | IPR000007 | - | |
Cmo16g00672 | 413 | ProSitePatterns | Tub family signature 2. | 398 | 413 | IPR018066 | - | |
Cmo16g00672 | 413 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 1 | 413 | - | - | |
Cmo16g00672 | 413 | Pfam | F-box domain | 57 | 103 | IPR001810 | GO:0005515 | |
Cmo16g00672 | 413 | Gene3D | - | 51 | 105 | - | - | |
Cmo16g00672 | 413 | SUPERFAMILY | F-box domain | 51 | 101 | IPR036047 | GO:0005515 | |
Cmo16g00672 | 413 | MobiDBLite | consensus disorder prediction | 270 | 319 | - | - | |
Cmo16g00672 | 413 | MobiDBLite | consensus disorder prediction | 287 | 305 | - | - | |
Cmo16g00672 | 413 | ProSitePatterns | Tub family signature 1. | 341 | 354 | IPR018066 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g01177 | Cmo-Chr8:7495224 | Cmo16g00672 | Cmo-Chr16:3330233 | 1.71E-153 | dispersed | |
Cmo09g00146 | Cmo-Chr9:656942 | Cmo16g00672 | Cmo-Chr16:3330233 | 0 | dispersed | |
Cmo16g00390 | Cmo-Chr16:1804780 | Cmo16g00672 | Cmo-Chr16:3330233 | 2.22E-158 | dispersed | |
Cmo16g00672 | Cmo-Chr16:3330233 | Cmo04g00803 | Cmo-Chr4:4013710 | 0 | wgd | |
Cmo16g00672 | Cmo-Chr16:3330233 | Cmo07g00480 | Cmo-Chr7:2191845 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11287 | PF01167 | Tub | 8.90E-107 | CL0395 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g00672 | K19600 | - | csv:101205595 | 762.296 |