Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00672 ATGTCGTTTAAAAGTTTTGTTAGAGAGCTGCGAGAGATTAAAGATGGAATTGGGAGCATTTCGAAACGAGGAGAAGAAGGGAGTAGGCATTGGCGCAACCGAACAATGTCACACATTGCACCTGATCAAGAAGAACATTCTCCATTGGAGTTAATTCAGCAAGGTCGATGGGCAAATCTACCCCCCGAATTACTTCTAGACATCATCCGGAGAGTGGAAGAGAGTGAAACCTCATGGCCTTCTCGAGCTATAGTCGTTTTTTGTGCTTCAGTTTGTAGGTCTTGGAGGGCCATTACAAAGGAGATTATCAGAACTCCTGAGCAATGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCTCGGGAGTCTCCATTTCAGTGCTTTATCAGAAGGGATAGAGCAACTTCGACCTACCTCCTGTACTTCGGTTTGGCTCCTTCGGAGGACGAAAAACATAAACTGTTGTTAGCAGCCAAGAGGGTCAGAAGAGCAGCCGGTACTGACTTTATCATATCTTTAGTAGCTGATGATTTTTCTCGAGCAAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGTACGAAGTTCTCGATTTATGATAGCCAGCCTCCTTGTGACCCTGCAGCTCAGCAAAGTAGTCGATCAAGCCGTAGATTTCACTCTAAGCAAGTCTCTCCTAGGGTACCTGCATGTAACTACAGTGTAGGTACAGTTTCTTATGAACTTAATGTTCTTCGCACTAGAGGTCCTCGGAGGATGCAGTGCGTCATGCAAACGATTCCAGTTTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCTACTTCATTCACACACTCTGATGACCACCTTTCTATCGAGTCCGATTCTATGAGAAAGGATTCAGGCAAGGACTTCGGCTCAAAGACCCCATCAGAACCAGCAGTTCAGGGATCAGATGAATCGTTAGTGCTTAAAAACAAGGCACCAAGATGGCACGAGCAGCTGCAGTGCTGGTGCCTAAATTTCAGAGGACGTGTGACGGTGGCATCCGTTAAGAACTTCCAACTCGTTGCAGCTGTTGATGAATCTCACAATGTTTCAGTGGAAGAGCAAGAGAAGGTAATTCTCCAGTTCGGAAAAATTGGAAAAGACATCTTCACCATGGATTACCACTATCCGCTCTCTGCATTCCAAGCCTTTGCAATCTGCTTGAGCAGCTTCGACACGAAGCCAGCCTGCGAATGA 1242 46.05 MSFKSFVRELREIKDGIGSISKRGEEGSRHWRNRTMSHIAPDQEEHSPLELIQQGRWANLPPELLLDIIRRVEESETSWPSRAIVVFCASVCRSWRAITKEIIRTPEQCGRLTFPISLKQPGPRESPFQCFIRRDRATSTYLLYFGLAPSEDEKHKLLLAAKRVRRAAGTDFIISLVADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAAQQSSRSSRRFHSKQVSPRVPACNYSVGTVSYELNVLRTRGPRRMQCVMQTIPVSSIQEGGTAPTPTSFTHSDDHLSIESDSMRKDSGKDFGSKTPSEPAVQGSDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDESHNVSVEEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3330233 3332397 + CmoCh16G006720.1 Cmo16g00672 399707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00672 413 MobiDBLite consensus disorder prediction 208 228 - -
Cmo16g00672 413 MobiDBLite consensus disorder prediction 270 286 - -
Cmo16g00672 413 SUPERFAMILY Tubby C-terminal domain-like 106 413 IPR025659 -
Cmo16g00672 413 PRINTS Tubby superfamily signature 172 188 IPR000007 -
Cmo16g00672 413 PRINTS Tubby superfamily signature 188 212 IPR000007 -
Cmo16g00672 413 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Cmo16g00672 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Cmo16g00672 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Cmo16g00672 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Cmo16g00672 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Cmo16g00672 413 MobiDBLite consensus disorder prediction 209 224 - -
Cmo16g00672 413 PANTHER TUBBY-RELATED 1 413 - -
Cmo16g00672 413 Gene3D Tubby Protein; Chain A 115 413 IPR025659 -
Cmo16g00672 413 Pfam Tub family 118 408 IPR000007 -
Cmo16g00672 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Cmo16g00672 413 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 413 - -
Cmo16g00672 413 Pfam F-box domain 57 103 IPR001810 GO:0005515
Cmo16g00672 413 Gene3D - 51 105 - -
Cmo16g00672 413 SUPERFAMILY F-box domain 51 101 IPR036047 GO:0005515
Cmo16g00672 413 MobiDBLite consensus disorder prediction 270 319 - -
Cmo16g00672 413 MobiDBLite consensus disorder prediction 287 305 - -
Cmo16g00672 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01177 Cmo-Chr8:7495224 Cmo16g00672 Cmo-Chr16:3330233 1.71E-153 dispersed
Cmo09g00146 Cmo-Chr9:656942 Cmo16g00672 Cmo-Chr16:3330233 0 dispersed
Cmo16g00390 Cmo-Chr16:1804780 Cmo16g00672 Cmo-Chr16:3330233 2.22E-158 dispersed
Cmo16g00672 Cmo-Chr16:3330233 Cmo04g00803 Cmo-Chr4:4013710 0 wgd
Cmo16g00672 Cmo-Chr16:3330233 Cmo07g00480 Cmo-Chr7:2191845 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11287 PF01167 Tub 8.90E-107 CL0395 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00672 K19600 - csv:101205595 762.296