Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00674 ATGGGAACTGATGGTACTGAAAATGTTGAGGCAGCTTCAAATGTCCATTCCTTTAAGGTTCATTGTAGAATGTGCACCGAGTTAATGAAATTGGTTGACCGGGTGTCGGAGATATTACCGGAAATTGAAGCAGCTCGGCCTGGAAGCCCGGAAGGTCGAGAGGCGCTGTGCAATTTAAACAATGGAAAGATGAAAGCAGAGCTGCTTCTTCAGTATTGTCGAGAGTCTAGTAAGCTTTATCTGGCATTAACTGGAGATCGAATCATCTCTAGATGTCATAGAGTGAGGACTTTGTTGGAGCATAGTTTGCGTAAAATTAAGTACATGGTTCCTGTGACATTGGCTCGAAAGATCTCTCAAATGGCAGATGATCTTAGGGTTGCAAAGTTTATCCTCGACTCATCCGACGAAGAGGCTTGGAAGGCTTTGCGACAATTGCTGAAGCTAGGTGCTTCGCCTCCAGATGTATTGGAAAAGTCGGAAATCGCAACTCTTAAAATTGCTGCTTTGAGGCTTAATATTTCATCACCCAAGGAAATGTTATACGAGAAACGGTCCATCAGAAAACTATTAGATGATGTTGGTCACGGCGATCCCCCGAAAAAGAAGATTTTGACATACCTTCTATATATTTTGAAGAAGCATGGGGAGTTGATACTGCAAGAAATCAGGGAAAACCAAGCTGATAGTTCTAACAGTAATGGTCATGGGGAAATTGAAGTTAATGTGAAACATGGAAATAATGCTTCCCATGCTGATATGATACTCAACAGGGCCATTCCCCCTGAGGAATTTAAGTGCCCCATATCAATGAGATTGATGTATGATCCTGTTGTGATCGCGTCTGGAGTGACATATGAGAAGGTGTGGATTGAAAAGTGGTTTGAGGAGGGTCATAATACGTGCCCGCATACCAAAATGAAACTAACCGATTTTTCGATGATTCCTAATGTTGATCTAAAGAATGTAATTGATAAATGGTGCATAAAGTTTGGAGTCACAATCCCGGATCCAACTGTGGAACCAGAATGCCCCGAGGTTTGGGAGAATTCCATTGCTAGCTTTGGAAGTTCGATGAATGATATTCGTCTACCCATCGATTTTAGCAATATGTCGCTTGGAGGTCTCGATAATAGTTACTATCCAGATTCATTGAGGCTCAATGGTGGCAATGAATTGGCTATCAAGGCTGGGCAGAGTAAAGATCATGATCTGCAAAGGTTTCAATCCGATTCATATGCTGAGGAAGCAGACTTGGAGTTTCCATCTACCATAAATGAGCTTTCGTGGGAATCGAAATGCAAGATTATTAAAGATATGAAAGTTGTCATTAACAAAAAAGGCGTCGGTCCGGCCTTATCTGAAACCGTCGTGGATCACCTTGCCTTATTTTTAAAGGATGCGTGTGATCAGCAGGATTCCAAGGCTCAGAAAAATGGAGCTGAGCTATTTCTTTCACTTGTGAGAAGAAGCAGGTCTAATAGGCTGATTGTACCTGAGAAGGTTCTGACAACATTAGCTAGTTTATTGAATTCAGTTGTGACTTATGAAGTTCTTGCCATTTTAGAAGCGTTATCTGGCCACCGTAAATGCGGGTCTAATTTTGTCACATCTGGTGTCCTTGCTTCAATAGCTAAGTATCTCGACTCAGAGGTCGGAGACTTGCAAGAATTTGCCATTAAAACCTTTTACAATCTATCCTCAAACAGCGACATCTGCTCCGACATCGTTTCACTGGGGTGCATCCCAAAACTAGTTCCCTTGCTAAATTATGAGAATCTCTCAGGCAAATGTATATTCATTCTGAAAAATTTGTGCCACACAGAAGACGCAAGGATCTCTATTGTTGAAACTAATGGCTGCATTAGCTCTATTGCTCAATGTCTCTGGCTAGGCAGTCTCGAAGACCAGGAGCATGCCGTTACCATCCTCCTTTCGCTATGCTCGCAGCGATTCGAGTATTGTGAGTTAGTAATGGAGGAAGGTGTTATCCCCCCTCTTTCCAGTATAACTATGAAGGGTAGTGAAAAAGGAAAAGCGGGTGCCACCGAATTACTCCGACTTCTAAGAGACTTTCAGGATAATGAGCAGCAAGAACCTTGTGTTTCTGAACCTCCATACTCGTACGAACCCCCTTGCAACTCCGAGCAAGGGAAGCCGAGCAAGAAGTCTGGATTTCTTGGAATGAACATATCAATCTTCTCGAAGCGCGGTCTTCTAAAGAAGAAGTAA 2232 42.61 MGTDGTENVEAASNVHSFKVHCRMCTELMKLVDRVSEILPEIEAARPGSPEGREALCNLNNGKMKAELLLQYCRESSKLYLALTGDRIISRCHRVRTLLEHSLRKIKYMVPVTLARKISQMADDLRVAKFILDSSDEEAWKALRQLLKLGASPPDVLEKSEIATLKIAALRLNISSPKEMLYEKRSIRKLLDDVGHGDPPKKKILTYLLYILKKHGELILQEIRENQADSSNSNGHGEIEVNVKHGNNASHADMILNRAIPPEEFKCPISMRLMYDPVVIASGVTYEKVWIEKWFEEGHNTCPHTKMKLTDFSMIPNVDLKNVIDKWCIKFGVTIPDPTVEPECPEVWENSIASFGSSMNDIRLPIDFSNMSLGGLDNSYYPDSLRLNGGNELAIKAGQSKDHDLQRFQSDSYAEEADLEFPSTINELSWESKCKIIKDMKVVINKKGVGPALSETVVDHLALFLKDACDQQDSKAQKNGAELFLSLVRRSRSNRLIVPEKVLTTLASLLNSVVTYEVLAILEALSGHRKCGSNFVTSGVLASIAKYLDSEVGDLQEFAIKTFYNLSSNSDICSDIVSLGCIPKLVPLLNYENLSGKCIFILKNLCHTEDARISIVETNGCISSIAQCLWLGSLEDQEHAVTILLSLCSQRFEYCELVMEEGVIPPLSSITMKGSEKGKAGATELLRLLRDFQDNEQQEPCVSEPPYSYEPPCNSEQGKPSKKSGFLGMNISIFSKRGLLKKK 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3336796 3341210 - CmoCh16G006740.1 Cmo16g00674 399709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00674 743 Pfam Kinesin-associated protein (KAP) 518 635 - -
Cmo16g00674 743 CDD RING-Ubox_PUB 265 306 IPR045210 -
Cmo16g00674 743 Gene3D - 595 702 IPR011989 -
Cmo16g00674 743 Gene3D - 451 594 IPR011989 -
Cmo16g00674 743 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 5 24 705 - -
Cmo16g00674 743 SUPERFAMILY RING/U-box 261 337 - -
Cmo16g00674 743 PANTHER U BOX DOMAIN-CONTAINING 24 705 - -
Cmo16g00674 743 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Cmo16g00674 743 Pfam U-box domain 262 328 IPR003613 GO:0004842|GO:0016567
Cmo16g00674 743 SMART arm_5 608 649 IPR000225 GO:0005515
Cmo16g00674 743 SMART arm_5 569 607 IPR000225 GO:0005515
Cmo16g00674 743 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Cmo16g00674 743 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 330 IPR013083 -
Cmo16g00674 743 MobiDBLite consensus disorder prediction 698 726 - -
Cmo16g00674 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 580 620 IPR000225 GO:0005515
Cmo16g00674 743 SUPERFAMILY ARM repeat 470 694 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00674 - - - cmax:111482874 1441.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01920 Cmo-Chr4:9795617 Cmo16g00674 Cmo-Chr16:3336796 1.66E-58 dispersed
Cmo05g00089 Cmo-Chr5:359746 Cmo16g00674 Cmo-Chr16:3336796 7.29E-90 dispersed
Cmo12g00050 Cmo-Chr12:263478 Cmo16g00674 Cmo-Chr16:3336796 2.63E-90 dispersed
Cmo16g00674 Cmo-Chr16:3336796 Cmo18g00698 Cmo-Chr18:8845107 4.70E-72 dispersed
Cmo16g00674 Cmo-Chr16:3336796 Cmo04g00805 Cmo-Chr4:4016086 2.80E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g984 Blo04g00915 Blo16g00047 . . . Bpe13g00442 . . . Cmo16g00674 . . . . . . . . . . . . . . . . . . . . . Cone8ag0814 Cone12ag0712 Cone6ag1628 Cone9ag1553 . . Chy07g01240 . . . Bda11g01864 . . . . Bma06g00119 . . . Cma16g00618 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003260 2 8 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 0 1 1 1 1 1 5 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00674 Cmo_Chr16 FPKM 3.273092 3.03451 4.972813 4.106574 6.106062 6.651103 5.101651 1.62064 1.650398 0.765203