Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00681 ATGTTGCAGCCCTCTTTTCTTCTGAATCCGAAGTGTTCTCCATCTGTAATCGAAGCAAAAAAATTGAAGAACAACGACGAGGACGAAGAACAAGTGAGGAAGATGGGAACATTGGGAAAGGCAATTTACACCGTCGGATTCTGGATCCGGGAGACCGGCCAAGCCCTCGATCGTCTTGGTTGCCGCCTCCAAGGGAATTACTACTTTCAAGAACAACTATCTAGGCATAGGACGCTCATGAACATATTTGACAAGGCTCCTGTGGTTGACAAGGATGCATTTGTGGCGCCTAGTGCATCTATCATTGGTGATGTGCAGGTGGGACGGGGTTCCTCCATTTGGTATGGGTGTGTTTTGAGAGGTGATGTTAACAGCATTAGTGTTGGTTCCGGGACCAACATACAAGACAACTCTTTAGTTCACGTAGCAAATTCCAATTTGAGTGGAAAGGTTTTACCAACGATCATTGGAGATAATGTTACTGTTGGTCACAGTGCCGTGTTACATGGATGTACTATTGAGGACGAGGCATTTGTGGGGATGGGAGCGACATTGCTTGATGGAGTCTTCGTCGAAAAACATGCAATGGTTGCTGCTGGAGCACTTGTGAGGCAGAATACAAGGATCCCATGCGGAGAGGTATGGGGAGGCAATCCGGCCAAATTCCTGAGGAAGCTTACAGAAGAAGAGATGGCCTTTATCTCCCAGTCAGCCATTAATTATTCGAACTTATCACAGGTTCATGCAGCTGAAAACGTAAAGAGCTTTGACGAAATTGAATTCGAAAAGGTTCTTCGCAAGAAGTTTGCTCGTCGTGATGAAGAGTATGATTCAATGCTGGGCGTTGTTCGTGAAACCCCCCCAGAGCTCATTCTTCCAGATAATATACTAGCCAACAAAGTACCAAAATCTTCTTAA 918 45.53 MLQPSFLLNPKCSPSVIEAKKLKNNDEDEEQVRKMGTLGKAIYTVGFWIRETGQALDRLGCRLQGNYYFQEQLSRHRTLMNIFDKAPVVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVANSNLSGKVLPTIIGDNVTVGHSAVLHGCTIEDEAFVGMGATLLDGVFVEKHAMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTEEEMAFISQSAINYSNLSQVHAAENVKSFDEIEFEKVLRKKFARRDEEYDSMLGVVRETPPELILPDNILANKVPKSS 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3364169 3370054 + CmoCh16G006810.1 Cmo16g00681 399716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00681 305 PANTHER GAMMA CARBONIC ANHYDRASE 1, MITOCHONDRIAL 35 304 - -
Cmo16g00681 305 Pfam Hexapeptide repeat of succinyl-transferase 153 185 IPR001451 -
Cmo16g00681 305 Gene3D Hexapeptide repeat proteins 77 256 - -
Cmo16g00681 305 CDD LbH_gamma_CA_like 88 246 - -
Cmo16g00681 305 PANTHER DYNACTIN SUBUNIT P25 35 304 - -
Cmo16g00681 305 SUPERFAMILY Trimeric LpxA-like enzymes 81 244 IPR011004 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00681 K01726 GAMMACA; gamma-carbonic anhydrase [EC:4.2.1.-] - csv:101204629 527.709
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00810 Cmo16g00681 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00261 Cmo-Chr5:1117152 Cmo16g00681 Cmo-Chr16:3364169 7.99E-164 dispersed
Cmo12g00407 Cmo-Chr12:2528080 Cmo16g00681 Cmo-Chr16:3364169 1.92E-160 dispersed
Cmo16g00681 Cmo-Chr16:3364169 Cmo04g00810 Cmo-Chr4:4047277 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g998 . . . . . Bpe13g00438 . . Cmo04g00810 Cmo16g00681 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1637 . . . Chy07g01248 . . . Bda11g01858 . . . . Bma06g00116 . . . Cma16g00625 . . . . Cpe14g00534 . . . . . . . Cla07g00818 Cam07g0882 Cec07g0935 Cco07g0923 Clacu07g0857 . . Lsi07g00249 Csa04g00555 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002586 4 2 2 1 2 1 3 1 1 2 1 1 4 2 2 4 1 3 3 1 2 1 2 2 1 1 2 4 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00681 Cmo_Chr16 FPKM 1.729554 2.574109 1.672805 1.578476 5.638958 4.00719 4.329611 0.0 0.0 0.154949