Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00687 ATGGCTACGTTCGTGGAGCCACCGAACGGAATCAGGTCAATGGGGAAGCATTATTACACAATGTGGCAAACTCTGTTTGAAATTGATATTAAGTACGTCCCAATCAAACCGATTGGGCGAGGAGCTTATGGTGTGGTGTGTTCTTCAATCAACCGAGAGACCAATGAAAAAGTGGCGATCAAGAAGATTCATAATGTGTTTGAGAATCGCACGGACGCCATGAGAACGCTGAGGGAGCTTAAGCTTCTGAGGCATATTAGGCACGACAACGTGATTGCTTTGAAGGATGTAATGATGCCTATCCATAGAAAAAACTTTAAGGATGTGTATTTGGTTTATGAGCTCATGGATACGGATCTCCATCAGATTATTAAGTCTTCTCAGCCTCTTTCCAATGATCATTGCAAATATTTTATCTATCAGTTGCTTTGCGGGTTGCAATATCTTCATTCAGCGAACATTCTTCACCGGGATTTGAAGCCCGGGAACCTCCTCGTCAATGCTAACTGTGATCTGAAGATATGCGATTTCGGGTTGGCACGAACTAGCATGGGTCATGACCAGTTCATGACTGAGTATGTTGTCACTCGCTGGTATCGCGCACCAGAGCTTCTCCTCTGCTGTGACAACTATGGGACTTCTATTGATGTATGGTCGGTAGGCTGCATCTTTGCTGAGATTCTGGGTCGGCAGCCTATCTTCCCGGGGACGGAGTGCTTCAACCAACTCAACTTAATCATGAACGTTCTCGGTTCTCCGAAGGAAGCTGATATCAAGTTCATTGACAATGCAAAAGCCAGAAAGTATATCAAGGGGATGCCGTTTTCAAGAGGAATAAACCTTTCACATCTATATCCAGACGCCGAACCTTTAGCTCTAGACTTATTACAAAAGATGATTGTATTTGATCCAACTAAGAGAATTACAGTTGACGAAGCACTTCAACATCCCTACATGTCGGGGCTATACGACCCAAAATTCAATCCTCTAGCCAATGTTCCCCTCACTCTTGACATCGAAGACTCACTCGAGGAGAACAAAATCAGGGAAATGATGTTGAACGAGATGCTCTATTACCATCCCGAAGCAGCATATTCTTGA 1101 44.05 MATFVEPPNGIRSMGKHYYTMWQTLFEIDIKYVPIKPIGRGAYGVVCSSINRETNEKVAIKKIHNVFENRTDAMRTLRELKLLRHIRHDNVIALKDVMMPIHRKNFKDVYLVYELMDTDLHQIIKSSQPLSNDHCKYFIYQLLCGLQYLHSANILHRDLKPGNLLVNANCDLKICDFGLARTSMGHDQFMTEYVVTRWYRAPELLLCCDNYGTSIDVWSVGCIFAEILGRQPIFPGTECFNQLNLIMNVLGSPKEADIKFIDNAKARKYIKGMPFSRGINLSHLYPDAEPLALDLLQKMIVFDPTKRITVDEALQHPYMSGLYDPKFNPLANVPLTLDIEDSLEENKIREMMLNEMLYYHPEAAYS 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3402841 3405209 + CmoCh16G006870.1 Cmo16g00687 399722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00687 366 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 364 - -
Cmo16g00687 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Cmo16g00687 366 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 364 - -
Cmo16g00687 366 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
Cmo16g00687 366 SUPERFAMILY Protein kinase-like (PK-like) 31 326 IPR011009 -
Cmo16g00687 366 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cmo16g00687 366 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Cmo16g00687 366 Gene3D Phosphorylase Kinase; domain 1 19 353 - -
Cmo16g00687 366 Pfam Protein kinase domain 33 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00687 366 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00687 366 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00808 Cmo16g00687 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00817 Cmo-Chr4:4071702 Cmo16g00687 Cmo-Chr16:3402841 0 dispersed
Cmo04g00819 Cmo-Chr4:4076909 Cmo16g00687 Cmo-Chr16:3402841 0 dispersed
Cmo12g00395 Cmo-Chr12:2454389 Cmo16g00687 Cmo-Chr16:3402841 0 dispersed
Cmo16g00687 Cmo-Chr16:3402841 Cmo08g00862 Cmo-Chr8:5567966 2.96E-147 dispersed
Cmo16g00687 Cmo-Chr16:3402841 Cmo05g00267 Cmo-Chr5:1150727 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74966 PF00069 Pkinase 2.30E-71 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00687 K20537 - csv:101203896 694.886