Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00694 ATGATGACGACGACGACAATGAAGAGGAAAGCCGCCAGTTATCTCTTCAGATACTCTCGAAATTTTCACTCCGATCAGCGTTTTAATCTGAATCGCAACAATTCGCGTCTGCTTTCAGGAACTTTCTTGTGCTGCAAAACGCCTATCATTAGAGACAGCACGCCAATTTCACAATATTGCAGAAACGCTTATCATGCTTCTGCGATCAATCATTTTAGAATGGCTAGTGGATTTCAGTTCAGACGCTTTGCTTCATTATCGTCAGTGGTTCAGAGAAATCCTTCTTTTTCTAGGTTAAATTCTGATGATATCGACTTTTTTCGGAGTATTTTGGGGGAGAAAAATGTAGTTCAGGATGAGGATAGGCTTTTGGATGCAAATACTGATTGGTTGCGGAAGTACAGAGGGTCGAGTAAGCTTTTACTTCAACCTAGGAGCACAGAAGAGGTCTCTCAGATACTTAAATATTGTAACTCCAGAGACTTGCCTGTTGTACCCCAAGGTGGAAATACTGGTCTTGTTGGCGGAAGTGTTCCAGTTTTTGATGAAGTAATAATCAACCTTGGATTAATGAATGACATCATATCTTTTGACAAGGTCAGTGGCATACTTGTTTGTGAAGCCGGTGGCATCTTAGAAAACTTGTCTTCCTTCCTGGACAACCAAGGATTTATAATGCCACTGGACTTAGGTGCTAAAGGAAGCTGCCAGATTGGTGGAAATGTTTCTACAAATGCCGGCGGTTTGCGCCTTGTTCGTTATGGATCTCTTCATGGCAGTGTACTTGGACTTGAAGTTGTTTTAGCAGATGGTAGCGTGCTCGACATGCTGACAACTTTAAGAAAAGATAACACTGGATATGATTTGAAGCATTTGTTTATAGGTAGTGAAGGTACCTTGGGAATTATAACCAAGATTTCAATTCTCACCCCATCTAAACTACCTGCTACTAATGTAGCATTTCTTGGATGTAAAGATTACTCGAGCTGCCAGAAACTTCTAGTGGATGCAAAAAGGAAACTTGGGGAGATTCTTTCAGCATTTGAATTTCTGGATAACATGTCGATGGATGTGGTTCTCAATCATTTAGAAGGTACACGGAATCCATTGCCTTCGACAATGCACAACTTTTATGTTCTGATTGAGACGACAGGCAGTAATGATTCATATGACAAGGAAAAGCTTGAAGCATTTCTACTTCGTTCGATGGAAGATGGTTTAATCTCTGACGGTGTTCTTGCACAAGATATCAACCAAATATCCTCTTTTTGGCAGATCCGTGAGGGCATTTCAGAGGCATTGATGAAAGCAGGAGCTGTTTACAAGTATGATTTGTCGTTACCTGTTGAGAAGATGTACGATATTGTCGAGGCAATGCGAACACGACTTGGCAACTCTGCTATAGTAATTGGTTACGGCCACCTTGGAGATGGTAATTTGCATCTGAATATTTCAACTCCACAGTATGATGATGCGGTTTTGGCACAAATTGAACCCTTTGTCTATGAATGGACTTCCAACCATCGTGGAAGCATCAGCGCAGAGCATGGCTTGGGATTGATGAAAGCCAACAAGATTTTCTACAGCAAGTCACCTGAAATTGTACAAATCATGGCTTCTATCAAGAAATTGCTGGACCCTCGTGGCATACTCAACCCCTATAAAGTTCTGCCGCACTCCCTCGGTTCCTAA 1692 41.61 MMTTTTMKRKAASYLFRYSRNFHSDQRFNLNRNNSRLLSGTFLCCKTPIIRDSTPISQYCRNAYHASAINHFRMASGFQFRRFASLSSVVQRNPSFSRLNSDDIDFFRSILGEKNVVQDEDRLLDANTDWLRKYRGSSKLLLQPRSTEEVSQILKYCNSRDLPVVPQGGNTGLVGGSVPVFDEVIINLGLMNDIISFDKVSGILVCEAGGILENLSSFLDNQGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGSVLGLEVVLADGSVLDMLTTLRKDNTGYDLKHLFIGSEGTLGIITKISILTPSKLPATNVAFLGCKDYSSCQKLLVDAKRKLGEILSAFEFLDNMSMDVVLNHLEGTRNPLPSTMHNFYVLIETTGSNDSYDKEKLEAFLLRSMEDGLISDGVLAQDINQISSFWQIREGISEALMKAGAVYKYDLSLPVEKMYDIVEAMRTRLGNSAIVIGYGHLGDGNLHLNISTPQYDDAVLAQIEPFVYEWTSNHRGSISAEHGLGLMKANKIFYSKSPEIVQIMASIKKLLDPRGILNPYKVLPHSLGS 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3427959 3438490 - CmoCh16G006940.1 Cmo16g00694 399729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00694 563 SUPERFAMILY FAD-linked oxidases, C-terminal domain 287 559 IPR016164 GO:0003824|GO:0050660
Cmo16g00694 563 Pfam FAD linked oxidases, C-terminal domain 316 556 IPR004113 GO:0003824|GO:0050660
Cmo16g00694 563 Gene3D - 438 516 - -
Cmo16g00694 563 SUPERFAMILY FAD-binding/transporter-associated domain-like 102 310 IPR036318 GO:0050660
Cmo16g00694 563 Pfam FAD binding domain 140 275 IPR006094 GO:0050660
Cmo16g00694 563 Gene3D - 88 189 IPR016167 -
Cmo16g00694 563 Gene3D - 315 436 - -
Cmo16g00694 563 Gene3D - 517 557 IPR016171 -
Cmo16g00694 563 ProSiteProfiles PCMH-type FAD-binding domain profile. 134 313 IPR016166 GO:0071949
Cmo16g00694 563 Gene3D - 192 311 IPR016169 -
Cmo16g00694 563 PANTHER D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL 87 560 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00694 K18204 D2HGDH; D-2-hydroxyglutarate dehydrogenase [EC:1.1.99.39] - csv:101216583 969.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00560 Cmo-Chr6:2719754 Cmo16g00694 Cmo-Chr16:3427959 1.66E-44 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1051 . . . . . Bpe13g00429 . . . Cmo16g00694 . . . . . . . . . . . . . . . . . . . . . . Cone12ag0783 . . . . Chy07g01262 . . . Bda11g01848 . . . . Bma06g00108 . . . Cma16g00636 . . . . Cpe14g00543 . . . . . . . Cla07g00835 Cam07g0904 Cec07g0957 Cco07g0947 Clacu07g0879 Cmu07g0879 Cre07g1240 Lsi07g00234 Csa04g00541 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009582 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00694 Cmo_Chr16 FPKM 16.117022 19.807812 2.341807 2.3454 8.455825 3.307229 8.030655 7.475897 10.41047 11.775373