Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00699 ATGGCCGGTTTTTTCCCACTAGGCGGCGGAGGCGGCGGCAGCAGCGGCGGTGAGATTATTCATCCAACCGACGGATTACTTTGGTACAAGAATTATGAGAGCTTCGAAACAGAACAACAGCAACAAGGTGGAGAAGGGTTTGTTTACTCCGGCGAAAATTCGCCGGCGAGATCGTCGCTGGTGATGGTGAGATCCGGCGGAGGGAAGGTTATTAGCTGCCAAGATTGTGGGAATCAAGCGAAAAAAGATTGCGTTCATATGCGATGTAGAACATGTTGTAAAAGCCGTGGGTTTTTGTGTGAAACCCACGTTAAAAGTACATGGGTACCAGCCTCCAAACGCCGTGAGCGGCTGATCCGTACTGCCGGCGGTGACTCCAAACGCCCTAGAGACACCCACGCCGCTTCTTCAGGGTTTGAAATAGGGAATTTCCCGGCGGAAGTAAACTCCACGGCGGTGTTCCGATGCGTACGGATGACAACATTAGACGAACCCACCGGCACCGATCAATATGCTTATCAAACCGCCGTCAACATCGGTGGCCATATCTTCAAGGGCATTCTTTACGACCACGGCCCTGATCAACAACACCACCACCACAACCCACCCATCTCCGCCTCCCCGGACGGCGGAGCCCTCCTCATCACCACCGCCGAGTCCGCCGCACCGCTGGATCCTCCGCCGTCATACCCAGCTCCACTCAACAGCTACATCCCCGCCGGTACGCAATTTTTTCAGCCCCCGACATCTTAG 753 54.85 MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3464046 3465386 - CmoCh16G006990.1 Cmo16g00699 399734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00699 250 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 72 114 IPR006510 -
Cmo16g00699 250 MobiDBLite consensus disorder prediction 190 211 - -
Cmo16g00699 250 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 144 193 IPR006511 -
Cmo16g00699 250 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 247 IPR007818 GO:0003700|GO:0006355
Cmo16g00699 250 Pfam Domain of unknown function (DUF702) 71 194 - -
Cmo16g00699 250 PANTHER PROTEIN SHORT INTERNODES 1 247 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo07g00450 Cmo16g00699 CCT
Cmo03g00734 Cmo16g00699 CCT
Cmo07g00450 Cmo16g00699 ECH
Cmo03g00734 Cmo16g00699 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g02001 Cmo-Chr1:14124980 Cmo16g00699 Cmo-Chr16:3464046 4.32E-58 dispersed
Cmo04g00822 Cmo-Chr4:4086461 Cmo16g00699 Cmo-Chr16:3464046 1.48E-108 dispersed
Cmo16g00699 Cmo-Chr16:3464046 Cmo19g00311 Cmo-Chr19:2339193 2.53E-53 dispersed
Cmo16g00699 Cmo-Chr16:3464046 Cmo03g00734 Cmo-Chr3:6254612 4.84E-63 wgd
Cmo16g00699 Cmo-Chr16:3464046 Cmo07g00450 Cmo-Chr7:2060308 1.76E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11290 PF05142 DUF702 2.10E-50 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00699 - - bhj:120073083 362.459