Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g00699 | ATGGCCGGTTTTTTCCCACTAGGCGGCGGAGGCGGCGGCAGCAGCGGCGGTGAGATTATTCATCCAACCGACGGATTACTTTGGTACAAGAATTATGAGAGCTTCGAAACAGAACAACAGCAACAAGGTGGAGAAGGGTTTGTTTACTCCGGCGAAAATTCGCCGGCGAGATCGTCGCTGGTGATGGTGAGATCCGGCGGAGGGAAGGTTATTAGCTGCCAAGATTGTGGGAATCAAGCGAAAAAAGATTGCGTTCATATGCGATGTAGAACATGTTGTAAAAGCCGTGGGTTTTTGTGTGAAACCCACGTTAAAAGTACATGGGTACCAGCCTCCAAACGCCGTGAGCGGCTGATCCGTACTGCCGGCGGTGACTCCAAACGCCCTAGAGACACCCACGCCGCTTCTTCAGGGTTTGAAATAGGGAATTTCCCGGCGGAAGTAAACTCCACGGCGGTGTTCCGATGCGTACGGATGACAACATTAGACGAACCCACCGGCACCGATCAATATGCTTATCAAACCGCCGTCAACATCGGTGGCCATATCTTCAAGGGCATTCTTTACGACCACGGCCCTGATCAACAACACCACCACCACAACCCACCCATCTCCGCCTCCCCGGACGGCGGAGCCCTCCTCATCACCACCGCCGAGTCCGCCGCACCGCTGGATCCTCCGCCGTCATACCCAGCTCCACTCAACAGCTACATCCCCGCCGGTACGCAATTTTTTCAGCCCCCGACATCTTAG | 753 | 54.85 | MAGFFPLGGGGGGSSGGEIIHPTDGLLWYKNYESFETEQQQQGGEGFVYSGENSPARSSLVMVRSGGGKVISCQDCGNQAKKDCVHMRCRTCCKSRGFLCETHVKSTWVPASKRRERLIRTAGGDSKRPRDTHAASSGFEIGNFPAEVNSTAVFRCVRMTTLDEPTGTDQYAYQTAVNIGGHIFKGILYDHGPDQQHHHHNPPISASPDGGALLITTAESAAPLDPPPSYPAPLNSYIPAGTQFFQPPTS | 250 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 3464046 | 3465386 | - | CmoCh16G006990.1 | Cmo16g00699 | 399734 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g00699 | 250 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 72 | 114 | IPR006510 | - | |
Cmo16g00699 | 250 | MobiDBLite | consensus disorder prediction | 190 | 211 | - | - | |
Cmo16g00699 | 250 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 144 | 193 | IPR006511 | - | |
Cmo16g00699 | 250 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 247 | IPR007818 | GO:0003700|GO:0006355 | |
Cmo16g00699 | 250 | Pfam | Domain of unknown function (DUF702) | 71 | 194 | - | - | |
Cmo16g00699 | 250 | PANTHER | PROTEIN SHORT INTERNODES | 1 | 247 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo07g00450 | Cmo16g00699 | CCT | |
Cmo03g00734 | Cmo16g00699 | CCT | |
Cmo07g00450 | Cmo16g00699 | ECH | |
Cmo03g00734 | Cmo16g00699 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g02001 | Cmo-Chr1:14124980 | Cmo16g00699 | Cmo-Chr16:3464046 | 4.32E-58 | dispersed | |
Cmo04g00822 | Cmo-Chr4:4086461 | Cmo16g00699 | Cmo-Chr16:3464046 | 1.48E-108 | dispersed | |
Cmo16g00699 | Cmo-Chr16:3464046 | Cmo19g00311 | Cmo-Chr19:2339193 | 2.53E-53 | dispersed | |
Cmo16g00699 | Cmo-Chr16:3464046 | Cmo03g00734 | Cmo-Chr3:6254612 | 4.84E-63 | wgd | |
Cmo16g00699 | Cmo-Chr16:3464046 | Cmo07g00450 | Cmo-Chr7:2060308 | 1.76E-65 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11290 | PF05142 | DUF702 | 2.10E-50 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g00699 | - | - | bhj:120073083 | 362.459 |