Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00703 ATGGAATGTGTTGATGGAGCTCTCGAGATTCTTCAATTGAGCCCACAGCTCTGTTTTCGCGATAATGGCTGTTTTAATCCCCAGAATCTTCCCACCTCCGATGATTTCTTTGTCGACCAACTCCTCGATTTCTCCAATGATGATCAATTTGTTCAAGACCAGACCCCCGACGAGGACGAACACGACCACGATGACTCTGTTTCTCTTTCCGGTCGAGAAATTCATCAGAACTCCATTGTTTCCGATCATCCTTCTTTACCCTCCGGCGAACTTACCGTTCCGGTGGATGATTTAGCAGACCTCGAATGGTTATCTCATTTCGTTGAGGATTCTTTCTCTGGATTCTCGGCTTCTTTCCCCTCCGCCGGAATTTCTTCCTTGGTGAAATCGTCAAAGGACTCCGCCGCCGTAGACAAGAAACCGAGCCACGGTGGTTCCATTTCGCCGCCGGAGAACTGTTTCAAAACTCCCATTCCAGTTAAGGCTAGAAGCAAACGGACGAGAACTGGCGGTCGAGTTTGGTGCCTCGCCTCACCGTCGTTGACCGAGTCATCCTCAAGTTCCACAACGTCGTCGTCCTCCTCCTCGTCGCCGGCTAGTCCTTGGCTTATACTTCCCGACCGTTACGAACCGGAAATTCCAAAGAAGAAACCAAGGAGAAAGTCGTTATCAGAAAAGCCCAAAACCAACGTCGGAGCTCAGCCTCCACGGCGGTGCAGCCATTGCGGAGTCCAGAAAACCCCCCAATGGAGAACCGGCCCCCTCGGAGCCAAAACTGTCTGCAACGCTTGCGGCGTCCGATTCAAATCGGGTCGACTATTACCCGAATACCGACCCGCCTGTAGTCCAACTTTCTCCAGCGAATTGCACTCCAACCACCACCGGAAAGTCCTCGAGATGCGCCGTAAAAAGGAAATCGCCGCCCCGGCCGAGTTATTGACCTTAGAACAGAAATAG 957 51.83 MECVDGALEILQLSPQLCFRDNGCFNPQNLPTSDDFFVDQLLDFSNDDQFVQDQTPDEDEHDHDDSVSLSGREIHQNSIVSDHPSLPSGELTVPVDDLADLEWLSHFVEDSFSGFSASFPSAGISSLVKSSKDSAAVDKKPSHGGSISPPENCFKTPIPVKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSSPASPWLILPDRYEPEIPKKKPRRKSLSEKPKTNVGAQPPRRCSHCGVQKTPQWRTGPLGAKTVCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEIAAPAELLTLEQK 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3498974 3500408 + CmoCh16G007030.1 Cmo16g00703 399738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00703 318 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Cmo16g00703 318 MobiDBLite consensus disorder prediction 181 246 - -
Cmo16g00703 318 PIRSF Txn_fac_GATA_plant 8 318 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cmo16g00703 318 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Cmo16g00703 318 PANTHER GATA TRANSCRIPTION FACTOR 1 307 - -
Cmo16g00703 318 SMART GATA_3 233 287 IPR000679 GO:0006355|GO:0043565
Cmo16g00703 318 MobiDBLite consensus disorder prediction 135 166 - -
Cmo16g00703 318 CDD ZnF_GATA 238 286 IPR000679 GO:0006355|GO:0043565
Cmo16g00703 318 MobiDBLite consensus disorder prediction 181 201 - -
Cmo16g00703 318 Pfam GATA zinc finger 239 273 IPR000679 GO:0006355|GO:0043565
Cmo16g00703 318 Gene3D - 230 306 IPR013088 GO:0006355|GO:0008270
Cmo16g00703 318 PANTHER GATA TRANSCRIPTION FACTOR 1 307 - -
Cmo16g00703 318 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 233 295 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00703 - - - cmax:111483139 564.303
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00367 Cmo-Chr2:1855553 Cmo16g00703 Cmo-Chr16:3498974 4.15E-61 dispersed
Cmo16g00703 Cmo-Chr16:3498974 Cmo20g00819 Cmo-Chr20:4050695 1.17E-50 dispersed
Cmo16g00703 Cmo-Chr16:3498974 Cmo03g00730 Cmo-Chr3:6244604 7.24E-63 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo05g00609 CCT,CST,ECH 78 342 C2C2-Gata Transcription Factor Family AT5G25830 54.3 1.5e-63 240.7
Cmo16g00703 . 28 305 C2C2-Gata Transcription Factor Family AT5G66320 51.4 2.0e-63 240.4
Cmo03g00730 . 98 281 C2C2-Gata Transcription Factor Family AT5G66320 50.5 7.8e-44 175.3
Cmo09g00615 CCT,ECH 34 289 C2C2-Gata Transcription Factor Family AT4G32890 50.6 1.5e-54 210.7
Cmo06g00835 . 1 489 C2C2-Gata Transcription Factor Family AT4G17570 53.8 8.0e-133 471.5
Cmo16g01159 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 52.2 1.4e-132 470.7
Cmo19g00407 . 1 492 C2C2-Gata Transcription Factor Family AT4G17570 51.3 3.0e-127 453.0
Cmo02g01613 . 643 1070 C2C2-Gata Transcription Factor Family AT4G17570 51.5 1.1e-110 397.9
Cmo06g00835 . 1 490 C2C2-Gata Transcription Factor Family AT5G47140 50.4 2.2e-113 406.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008902 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 2 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11292 PF00320 GATA 1.40E-15 CL0167 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00703 Cmo_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0