Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00703 ATGGAATGTGTTGATGGAGCTCTCGAGATTCTTCAATTGAGCCCACAGCTCTGTTTTCGCGATAATGGCTGTTTTAATCCCCAGAATCTTCCCACCTCCGATGATTTCTTTGTCGACCAACTCCTCGATTTCTCCAATGATGATCAATTTGTTCAAGACCAGACCCCCGACGAGGACGAACACGACCACGATGACTCTGTTTCTCTTTCCGGTCGAGAAATTCATCAGAACTCCATTGTTTCCGATCATCCTTCTTTACCCTCCGGCGAACTTACCGTTCCGGTGGATGATTTAGCAGACCTCGAATGGTTATCTCATTTCGTTGAGGATTCTTTCTCTGGATTCTCGGCTTCTTTCCCCTCCGCCGGAATTTCTTCCTTGGTGAAATCGTCAAAGGACTCCGCCGCCGTAGACAAGAAACCGAGCCACGGTGGTTCCATTTCGCCGCCGGAGAACTGTTTCAAAACTCCCATTCCAGTTAAGGCTAGAAGCAAACGGACGAGAACTGGCGGTCGAGTTTGGTGCCTCGCCTCACCGTCGTTGACCGAGTCATCCTCAAGTTCCACAACGTCGTCGTCCTCCTCCTCGTCGCCGGCTAGTCCTTGGCTTATACTTCCCGACCGTTACGAACCGGAAATTCCAAAGAAGAAACCAAGGAGAAAGTCGTTATCAGAAAAGCCCAAAACCAACGTCGGAGCTCAGCCTCCACGGCGGTGCAGCCATTGCGGAGTCCAGAAAACCCCCCAATGGAGAACCGGCCCCCTCGGAGCCAAAACTGTCTGCAACGCTTGCGGCGTCCGATTCAAATCGGGTCGACTATTACCCGAATACCGACCCGCCTGTAGTCCAACTTTCTCCAGCGAATTGCACTCCAACCACCACCGGAAAGTCCTCGAGATGCGCCGTAAAAAGGAAATCGCCGCCCCGGCCGAGTTATTGACCTTAGAACAGAAATAG 957 51.83 MECVDGALEILQLSPQLCFRDNGCFNPQNLPTSDDFFVDQLLDFSNDDQFVQDQTPDEDEHDHDDSVSLSGREIHQNSIVSDHPSLPSGELTVPVDDLADLEWLSHFVEDSFSGFSASFPSAGISSLVKSSKDSAAVDKKPSHGGSISPPENCFKTPIPVKARSKRTRTGGRVWCLASPSLTESSSSSTTSSSSSSSPASPWLILPDRYEPEIPKKKPRRKSLSEKPKTNVGAQPPRRCSHCGVQKTPQWRTGPLGAKTVCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRRKKEIAAPAELLTLEQK 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3498974 3500408 + CmoCh16G007030.1 Cmo16g00703 399738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00703 318 ProSiteProfiles GATA-type zinc finger domain profile. 233 269 IPR000679 GO:0006355|GO:0043565
Cmo16g00703 318 MobiDBLite consensus disorder prediction 181 246 - -
Cmo16g00703 318 PIRSF Txn_fac_GATA_plant 8 318 IPR016679 GO:0003677|GO:0005634|GO:0045893
Cmo16g00703 318 ProSitePatterns GATA-type zinc finger domain. 239 264 IPR000679 GO:0006355|GO:0043565
Cmo16g00703 318 PANTHER GATA TRANSCRIPTION FACTOR 1 307 - -
Cmo16g00703 318 SMART GATA_3 233 287 IPR000679 GO:0006355|GO:0043565
Cmo16g00703 318 MobiDBLite consensus disorder prediction 135 166 - -
Cmo16g00703 318 CDD ZnF_GATA 238 286 IPR000679 GO:0006355|GO:0043565
Cmo16g00703 318 MobiDBLite consensus disorder prediction 181 201 - -
Cmo16g00703 318 Pfam GATA zinc finger 239 273 IPR000679 GO:0006355|GO:0043565
Cmo16g00703 318 Gene3D - 230 306 IPR013088 GO:0006355|GO:0008270
Cmo16g00703 318 PANTHER GATA TRANSCRIPTION FACTOR 1 307 - -
Cmo16g00703 318 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 233 295 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00367 Cmo-Chr2:1855553 Cmo16g00703 Cmo-Chr16:3498974 4.15E-61 dispersed
Cmo16g00703 Cmo-Chr16:3498974 Cmo20g00819 Cmo-Chr20:4050695 1.17E-50 dispersed
Cmo16g00703 Cmo-Chr16:3498974 Cmo03g00730 Cmo-Chr3:6244604 7.24E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11292 PF00320 GATA 1.40E-15 CL0167 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00703 - - cmax:111483139 564.303