Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00706 ATGAGAGTTCCTGTTTCCAATCACCACTCATCCAAACCCTCCTCTGCTCCTGCCCCAAATCCTAAGCTCGACTCCTCCCCCTCCCCCACCGCCTTCCGCCCCCCCACCACCACAGCCACCGCCGCCACCCCCGGTTACGAACCCACCTCCGTCCTAGATCTCCGCCGCAGCCCCAGCCCCGTGGCGCCAGATAACCCCCTCTCCTCCGCTGACGATCGTCACAACAACAGCCATCCTCTGGACTGGGATGAACGCACTCTCCAGAACCTTGACTGGGAATCCATCATGGGCGATTTGGGCGTAAACGATGACTCCAATTCTGCTCTCAAGAACACCACCGCCGCCACTACCACCACCACCGATGACAATACCCACGATCATGTTCCTCAATTTTCCGAATTCCTTCACTCCCAGCCGTTCGATCAAACTGCCCACCTCCTCCCCTCTGATTTCTTCCTCACCGAACCATATTCCAATCACTCCGCCGCTATGCTCCACCACACCTTCGATTTCGCCCCCAATTCCAACGACCCATCTCTCCATTTCCTCGAAGATCTCGTCGACGCCGCCGATTGCTTCGATTCCAATGATTTCCATCTCGCTCACGTCATATTAGAACGGCTCAATCACCGCCTTCAATCTGCCTCCTCCGCCAAACCCCTTCACCGGGCCGCCTTCTTCTTCAAAGAAGCTCTTCAATCTCTCCTCTCCGCCGCCGCCAACCGCCATAACTCCTCCTCTTCCTGGCCCGACATCGTCCATACTATTAAGGCCCATAAGGCCTTCTCTGCAATTTCTCCGATTCCCCTGTTTTCCCACTTCACCACCAATCAAATCCTTCTCGAAGCTCTCAACGCTTCCTCTTTCATTCATATAATTGATTTCGACATCGGGTTTGGTGGGCAGTACGCCTCTTTTATGAAGGAGTTAGCTGATAAAGCAGAGTCCAGAAACGTCGTTCCGCCGGTGATTCGAATTACCGCCGTCGTGTTTGAGGAATTTGCGGTGGAGAGTCGGTTGACTAGAGAGAATCTCTGCCAGTTTGCTCAAGATTTGAAGCTCCGATTTCATATTGATCTTGTGCCGCTTCAGACTTTCAAGACGTTGTCGTTCAAATCGGTGAAATTCATGGAAGGGGAGAAGGTGGCGATTCTGTTAACTCCGACCATCTTCCGCCGTCTCGGGAGTTCTAATGGCATAGCCTCTTTTCTCGCCGACGTGCGATTAGTGTCTCCGTGCGTCGTCGTGTTCGTCGACTTCGAAGGGTGGTCGGATTCCGGCAAGGCGTCGTTCAAGAGGAATTTATTGGATAGTCTGGAGTTCTACGCCATGATGCTCGAGTCGCTGGACGCGGCAGGGGCCGACGGCGAGTGGGTGCGGCAGATTGAGACGTTTGTTCTTCGGCCGAAGATTTTGGCGGCGGTCGAAGGAGCAGGGAGAATTGCGGTGCCGCCGTGGAGGGAGGTGTTCCACTCGGTCGGGATGAGGCCGGTGGCGCTGAGTCAGTTTGCCGATTTTCAAGCGGAGTGCTTACTTGGCAAAGTACAGGTCCGAGGGTTCCAAGTTGGCAAACGGCATGCTGAGCTGGTGCTGTGCTGGCATGAGAGACCTCTGGTCGCCACGTCCGCGTGGAGGTGTTAA 1641 54.97 MRVPVSNHHSSKPSSAPAPNPKLDSSPSPTAFRPPTTTATAATPGYEPTSVLDLRRSPSPVAPDNPLSSADDRHNNSHPLDWDERTLQNLDWESIMGDLGVNDDSNSALKNTTAATTTTTDDNTHDHVPQFSEFLHSQPFDQTAHLLPSDFFLTEPYSNHSAAMLHHTFDFAPNSNDPSLHFLEDLVDAADCFDSNDFHLAHVILERLNHRLQSASSAKPLHRAAFFFKEALQSLLSAAANRHNSSSSWPDIVHTIKAHKAFSAISPIPLFSHFTTNQILLEALNASSFIHIIDFDIGFGGQYASFMKELADKAESRNVVPPVIRITAVVFEEFAVESRLTRENLCQFAQDLKLRFHIDLVPLQTFKTLSFKSVKFMEGEKVAILLTPTIFRRLGSSNGIASFLADVRLVSPCVVVFVDFEGWSDSGKASFKRNLLDSLEFYAMMLESLDAAGADGEWVRQIETFVLRPKILAAVEGAGRIAVPPWREVFHSVGMRPVALSQFADFQAECLLGKVQVRGFQVGKRHAELVLCWHERPLVATSAWRC 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3517368 3519008 - CmoCh16G007060.1 Cmo16g00706 399741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00706 546 Pfam GRAS domain family 184 545 IPR005202 -
Cmo16g00706 546 MobiDBLite consensus disorder prediction 1 81 - -
Cmo16g00706 546 MobiDBLite consensus disorder prediction 7 45 - -
Cmo16g00706 546 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 30 545 IPR005202 -
Cmo16g00706 546 PANTHER SCARECROW-LIKE PROTEIN 15 30 545 - -
Cmo16g00706 546 ProSiteProfiles GRAS family profile. 173 545 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00840 Cmo16g00706 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00706 Cmo-Chr16:3517368 Cmo16g01195 Cmo-Chr16:8521675 1.99E-67 dispersed
Cmo16g00706 Cmo-Chr16:3517368 Cmo16g00713 Cmo-Chr16:3569005 6.14E-26 proximal
Cmo16g00706 Cmo-Chr16:3517368 Cmo04g00829 Cmo-Chr4:4135304 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11293 PF03514 GRAS 5.00E-86 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00706 - - csv:116401665 808.135