Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00708 ATGCCGACGGATTTAGAAACTTCCGGTGAAGCCAGTATCTCCTCCACTGGAAATCAGCCTCCGCCGCCCAAATCCGCCGTGAAAAAGAAGCGTAATTTACCAGGAATGCCAGATCCGGAAGCAGAGGTAATTGCTCTGTCACCGGAAACCCTTTTGGCCACGAATCGATTTGTGTGTGAAATCTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTACACCGGCGAGGTCATAATCTTCCATGGAAACTCCGGCAACGAACGAGCAAAGAGGTGAAAAAGAAAGTGTATGTCTGCCCAGAGCCGTCGTGCGTCCACCACCATCCGTCGAGAGCCCTCGGCGATCTCACCGGAATAAAGAAGCATTTCTGCCGGAAACACAGCGAGAAGAAGTGGAAGTGCGACCGGTGCTCCAAGAAATACGCAGTCAAGTCGGATTGGAAAGCCCATTCCAAAATTTGTGGCACCAGAGAGTACAGATGTGACTGTGAAACTGTGTTTTCAAGAAGAGATAGTTTCATCACTCACAGAGCTTTCTGTGATGCGTTGACGAAGGAGGCCGCCGTTACTCTGTCTCCGGCGACGGCGGAGATTCCTAATTTGGAGTCCGATCCCCAAGTTCAGCCACCGAGTTGTTCGTCTCCGCCGCCTACTGCTGCTTCTCTTTCCGCCACTACCGCCAGCGCCGCCGCCCCAGTCCCTCCTCCATCATCCACTGAAGCGATATCTTCAATCTCGTCCATTCAGAAAAAAGCCTCGCCGGGAAATCCTCCGCCGCCGCTAGTAGAGGCACCAGGCAAAACGACCGTACCTAGCAACTCCAGCAGCAGCAACGCGACAGTATTGGCTAGCTTGTTTGCTTCATCCGCCGCATCACTGAGCTTACAGCCACCGCAGCAGCCCGGATTTTGCGACTTATTACGAGCCATGGCGCGACCCGATCGGGAGGCCGAAATAACACCGCCGTTGGTTTTTGAACCACTTTCTCTATGTCTGTCGAACCACAGCGAATGGTCGCTTTTCGGAGCCGGAATCCAAGAAAGTCGCCCATACGTGCCGCCAACGCCACCGGCCATGTCCGCCACTGGACTCCTGCAGAAGGCCGCTCAAATGGGTGCTGCTGCAGCGGCCAGCACATCAGTGTTTCGTGGATTTAGTTTGTCGTCTTCCTCTTCTTCTGCACAACAGGGGAGTTTATAA 1203 53.45 MPTDLETSGEASISSTGNQPPPPKSAVKKKRNLPGMPDPEAEVIALSPETLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHSEKKWKCDRCSKKYAVKSDWKAHSKICGTREYRCDCETVFSRRDSFITHRAFCDALTKEAAVTLSPATAEIPNLESDPQVQPPSCSSPPPTAASLSATTASAAAPVPPPSSTEAISSISSIQKKASPGNPPPPLVEAPGKTTVPSNSSSSNATVLASLFASSAASLSLQPPQQPGFCDLLRAMARPDREAEITPPLVFEPLSLCLSNHSEWSLFGAGIQESRPYVPPTPPAMSATGLLQKAAQMGAAAAASTSVFRGFSLSSSSSSAQQGSL 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3529729 3532115 - CmoCh16G007080.1 Cmo16g00708 399743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00708 400 MobiDBLite consensus disorder prediction 1 40 - -
Cmo16g00708 400 Pfam Zinc-finger of C2H2 type 57 79 - -
Cmo16g00708 400 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Cmo16g00708 400 Gene3D Classic Zinc Finger 37 104 - -
Cmo16g00708 400 MobiDBLite consensus disorder prediction 201 276 - -
Cmo16g00708 400 MobiDBLite consensus disorder prediction 218 253 - -
Cmo16g00708 400 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 7 395 - -
Cmo16g00708 400 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Cmo16g00708 400 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 395 - -
Cmo16g00708 400 MobiDBLite consensus disorder prediction 1 22 - -
Cmo16g00708 400 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Cmo16g00708 400 SMART c2h2final6 57 79 IPR013087 -
Cmo16g00708 400 SMART c2h2final6 133 153 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo03g00791 Cmo16g00708 CCT
Cmo07g00500 Cmo16g00708 CCT
Cmo07g00500 Cmo16g00708 ECH
Cmo03g00791 Cmo16g00708 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00791 Cmo-Chr3:6482721 Cmo16g00708 Cmo-Chr16:3529729 1.77E-119 dispersed
Cmo09g00165 Cmo-Chr9:741745 Cmo16g00708 Cmo-Chr16:3529729 3.60E-108 dispersed
Cmo12g00430 Cmo-Chr12:2652002 Cmo16g00708 Cmo-Chr16:3529729 1.15E-103 dispersed
Cmo16g00708 Cmo-Chr16:3529729 Cmo14g00196 Cmo-Chr14:889620 5.02E-109 dispersed
Cmo16g00708 Cmo-Chr16:3529729 Cmo07g00500 Cmo-Chr7:2256698 6.49E-114 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11294 PF12874 zf-met 0.0027 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00708 K25869 - csv:101215476 541.191