Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g00708 | ATGCCGACGGATTTAGAAACTTCCGGTGAAGCCAGTATCTCCTCCACTGGAAATCAGCCTCCGCCGCCCAAATCCGCCGTGAAAAAGAAGCGTAATTTACCAGGAATGCCAGATCCGGAAGCAGAGGTAATTGCTCTGTCACCGGAAACCCTTTTGGCCACGAATCGATTTGTGTGTGAAATCTGCAACAAAGGGTTTCAAAGAGATCAGAATCTGCAACTACACCGGCGAGGTCATAATCTTCCATGGAAACTCCGGCAACGAACGAGCAAAGAGGTGAAAAAGAAAGTGTATGTCTGCCCAGAGCCGTCGTGCGTCCACCACCATCCGTCGAGAGCCCTCGGCGATCTCACCGGAATAAAGAAGCATTTCTGCCGGAAACACAGCGAGAAGAAGTGGAAGTGCGACCGGTGCTCCAAGAAATACGCAGTCAAGTCGGATTGGAAAGCCCATTCCAAAATTTGTGGCACCAGAGAGTACAGATGTGACTGTGAAACTGTGTTTTCAAGAAGAGATAGTTTCATCACTCACAGAGCTTTCTGTGATGCGTTGACGAAGGAGGCCGCCGTTACTCTGTCTCCGGCGACGGCGGAGATTCCTAATTTGGAGTCCGATCCCCAAGTTCAGCCACCGAGTTGTTCGTCTCCGCCGCCTACTGCTGCTTCTCTTTCCGCCACTACCGCCAGCGCCGCCGCCCCAGTCCCTCCTCCATCATCCACTGAAGCGATATCTTCAATCTCGTCCATTCAGAAAAAAGCCTCGCCGGGAAATCCTCCGCCGCCGCTAGTAGAGGCACCAGGCAAAACGACCGTACCTAGCAACTCCAGCAGCAGCAACGCGACAGTATTGGCTAGCTTGTTTGCTTCATCCGCCGCATCACTGAGCTTACAGCCACCGCAGCAGCCCGGATTTTGCGACTTATTACGAGCCATGGCGCGACCCGATCGGGAGGCCGAAATAACACCGCCGTTGGTTTTTGAACCACTTTCTCTATGTCTGTCGAACCACAGCGAATGGTCGCTTTTCGGAGCCGGAATCCAAGAAAGTCGCCCATACGTGCCGCCAACGCCACCGGCCATGTCCGCCACTGGACTCCTGCAGAAGGCCGCTCAAATGGGTGCTGCTGCAGCGGCCAGCACATCAGTGTTTCGTGGATTTAGTTTGTCGTCTTCCTCTTCTTCTGCACAACAGGGGAGTTTATAA | 1203 | 53.45 | MPTDLETSGEASISSTGNQPPPPKSAVKKKRNLPGMPDPEAEVIALSPETLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVKKKVYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHSEKKWKCDRCSKKYAVKSDWKAHSKICGTREYRCDCETVFSRRDSFITHRAFCDALTKEAAVTLSPATAEIPNLESDPQVQPPSCSSPPPTAASLSATTASAAAPVPPPSSTEAISSISSIQKKASPGNPPPPLVEAPGKTTVPSNSSSSNATVLASLFASSAASLSLQPPQQPGFCDLLRAMARPDREAEITPPLVFEPLSLCLSNHSEWSLFGAGIQESRPYVPPTPPAMSATGLLQKAAQMGAAAAASTSVFRGFSLSSSSSSAQQGSL | 400 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 3529729 | 3532115 | - | CmoCh16G007080.1 | Cmo16g00708 | 399743 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g00708 | 400 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - | |
Cmo16g00708 | 400 | Pfam | Zinc-finger of C2H2 type | 57 | 79 | - | - | |
Cmo16g00708 | 400 | SUPERFAMILY | beta-beta-alpha zinc fingers | 56 | 153 | IPR036236 | - | |
Cmo16g00708 | 400 | Gene3D | Classic Zinc Finger | 37 | 104 | - | - | |
Cmo16g00708 | 400 | MobiDBLite | consensus disorder prediction | 201 | 276 | - | - | |
Cmo16g00708 | 400 | MobiDBLite | consensus disorder prediction | 218 | 253 | - | - | |
Cmo16g00708 | 400 | PANTHER | ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 | 7 | 395 | - | - | |
Cmo16g00708 | 400 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 59 | 79 | IPR013087 | - | |
Cmo16g00708 | 400 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 7 | 395 | - | - | |
Cmo16g00708 | 400 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cmo16g00708 | 400 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 57 | 79 | IPR013087 | - | |
Cmo16g00708 | 400 | SMART | c2h2final6 | 57 | 79 | IPR013087 | - | |
Cmo16g00708 | 400 | SMART | c2h2final6 | 133 | 153 | IPR013087 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo03g00791 | Cmo16g00708 | CCT | |
Cmo07g00500 | Cmo16g00708 | CCT | |
Cmo07g00500 | Cmo16g00708 | ECH | |
Cmo03g00791 | Cmo16g00708 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00791 | Cmo-Chr3:6482721 | Cmo16g00708 | Cmo-Chr16:3529729 | 1.77E-119 | dispersed | |
Cmo09g00165 | Cmo-Chr9:741745 | Cmo16g00708 | Cmo-Chr16:3529729 | 3.60E-108 | dispersed | |
Cmo12g00430 | Cmo-Chr12:2652002 | Cmo16g00708 | Cmo-Chr16:3529729 | 1.15E-103 | dispersed | |
Cmo16g00708 | Cmo-Chr16:3529729 | Cmo14g00196 | Cmo-Chr14:889620 | 5.02E-109 | dispersed | |
Cmo16g00708 | Cmo-Chr16:3529729 | Cmo07g00500 | Cmo-Chr7:2256698 | 6.49E-114 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11294 | PF12874 | zf-met | 0.0027 | CL0361 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g00708 | K25869 | - | csv:101215476 | 541.191 |