Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00710 ATGTCCTCCATCGCCACACGCCACATCCGTCGTCTATCGACGGCAGCCACCGCCACCGCCACCGCAACCGCTGCTGCCAAGGCCACAGCAACGACGTCCTCTTCAATATCCATTTCAAAAGCGAAATCTAAACTAAGAACAGAGTATGATCCAGATAAAGCTCTGAACATTTACTCTTCTGTTTCCAGTCACTACACTTCCCCTGTCTCCTCTCGCTATGCTCAGGAACTCACTATTCGGCGCCTTGCAAAGTCTCGTCGATTCGATGACATTGAATCCCTGATCGAATCCCATAAAAATGACCCAAAGATCACTCAGGAGCCCTTTTTGTCCACCTTGATTCGATCCTACGGTCAAGCTGGTATGTTCGAGCACGCTATGAGGACTTATAATCAGATGGAAGATTTCGGCACTCCTCGATCGGTGATTTCCTTCAATGCGCTATTGTGTGCATTTAACCATTCGAAGCAATTCGACAAAGTTCCTCAACTGTTCGATGAAATTCCGAAGAAATACAATTTCTCTCCCAATAAGATCTCGTACGGGATCCTGGTCAAATCCTATTGCGAATCCGGTTCTCCTGAGAAGGCCATGCAAATTGTAAGGGAAATGGAGGAAAACGATGTGGAGGTTACTGCGGTGACATTCACAACCATTTTAGATGCTCTGTACAAGAAGGGTGAGAGCGAAGAGGCAGAGAAAATCTGGAACAAGATGATATCAAAAGGGTGTGAACTCGATGTAGGGGCCTATAACGTAAGATTGATGCACGAGCACGGCGGCAAGCCAGAACACGTTGAAGCATTGATCGAGGAAATGGCTAATTCAGGTATGAAACCCGACACCATTAGCTATAATTACTTAATGACTTGTTATTGCAAGAATGGGATGATTGATGAAGCAAAGAAGGTGTATGATGATATGGAGATAAATGGGTGTAACAAGAACGCTGCAACTTTTAGGACATTTATGTATTACCTCTGTAGAAATGGAGATTATGAAAAAGGGTATATGGTTTTCAAGGAGAGTGTGAAGGTTCATAAGATTCCTGATGTTAACACAGTGAAGTATTTGGTGGAGGGGCTAATGGAGAAGAAGAAGATGAAAGAGGCCAAGGGTTTAATCAGGACCATAAGGAAGAAGTTCCCTCCTGATTCTTTGAAGACCTGGAGAAAAGTTGAGGAGGCTCTTGGTTTGGCTTCTTCTTCTAAGGCTGATGATGAAACTGAAGAATAA 1236 44.17 MSSIATRHIRRLSTAATATATATAAAKATATTSSSISISKAKSKLRTEYDPDKALNIYSSVSSHYTSPVSSRYAQELTIRRLAKSRRFDDIESLIESHKNDPKITQEPFLSTLIRSYGQAGMFEHAMRTYNQMEDFGTPRSVISFNALLCAFNHSKQFDKVPQLFDEIPKKYNFSPNKISYGILVKSYCESGSPEKAMQIVREMEENDVEVTAVTFTTILDALYKKGESEEAEKIWNKMISKGCELDVGAYNVRLMHEHGGKPEHVEALIEEMANSGMKPDTISYNYLMTCYCKNGMIDEAKKVYDDMEINGCNKNAATFRTFMYYLCRNGDYEKGYMVFKESVKVHKIPDVNTVKYLVEGLMEKKKMKEAKGLIRTIRKKFPPDSLKTWRKVEEALGLASSSKADDETEE 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3546620 3547855 + CmoCh16G007100.1 Cmo16g00710 399745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00710 411 PANTHER BNAA09G52830D PROTEIN 7 403 - -
Cmo16g00710 411 SUPERFAMILY TPR-like 281 385 IPR011990 GO:0005515
Cmo16g00710 411 Pfam PPR repeat 111 137 IPR002885 -
Cmo16g00710 411 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 7 403 - -
Cmo16g00710 411 Gene3D Tetratricopeptide repeat domain 1 156 IPR011990 GO:0005515
Cmo16g00710 411 SUPERFAMILY TPR-like 150 344 IPR011990 GO:0005515
Cmo16g00710 411 TIGRFAM PPR: pentatricopeptide repeat domain 143 177 IPR002885 -
Cmo16g00710 411 TIGRFAM PPR: pentatricopeptide repeat domain 319 345 IPR002885 -
Cmo16g00710 411 TIGRFAM PPR: pentatricopeptide repeat domain 179 212 IPR002885 -
Cmo16g00710 411 TIGRFAM PPR: pentatricopeptide repeat domain 214 248 IPR002885 -
Cmo16g00710 411 TIGRFAM PPR: pentatricopeptide repeat domain 283 315 IPR002885 -
Cmo16g00710 411 TIGRFAM PPR: pentatricopeptide repeat domain 111 138 IPR002885 -
Cmo16g00710 411 Pfam PPR repeat family 141 189 IPR002885 -
Cmo16g00710 411 Pfam PPR repeat family 213 253 IPR002885 -
Cmo16g00710 411 Pfam PPR repeat family 280 328 IPR002885 -
Cmo16g00710 411 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Cmo16g00710 411 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 211 IPR002885 -
Cmo16g00710 411 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 212 246 IPR002885 -
Cmo16g00710 411 Gene3D Tetratricopeptide repeat domain 157 256 IPR011990 GO:0005515
Cmo16g00710 411 Gene3D Tetratricopeptide repeat domain 257 411 IPR011990 GO:0005515
Cmo16g00710 411 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00710 - - - cmos:111435912 759.599
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00710 Cmo-Chr16:3546620 Cmo18g00280 Cmo-Chr18:1841308 1.01E-68 dispersed
Cmo16g00710 Cmo-Chr16:3546620 Cmo14g01371 Cmo-Chr14:11322490 5.17E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g942 . . . . . Bpe13g00453 . . . Cmo16g00710 . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1611 Cone9ag1539 . . Chy07g01284 . . . Bda11g01875 . . . . Bma06g00129 . . . Cma16g00653 . . . . Cpe14g00557 . . . . . . . Cla07g00859 Cam07g0931 Cec07g0996 Cco07g0972 Clacu07g0905 Cmu07g0905 Cre07g1273 Lsi07g00214 Csa04g00517 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012727 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00710 Cmo_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0