Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00712 ATGGTCGCTTTGTCCGACAACAGCATCAAACTCACCACTTCTAGCGACGACTCGCTTGGGCTGGAAATGGCTCTCGAGGAGAAACCAAGAGCTGATAATTCTGCAGAGTCACCGACCTCGGTTCTGGAAGACGAGGATATATGTAATGGGGAAAATGAGATCAAGTTGGAGGAAAAGATAATTTTGGAAGCAAAAAATGGGGATTCCAGTCTCATATCAAAAGAAATGGCAGAGGAGGAACAGAAATTGCTGGAAGCTCGGGTTAAGGATGAGGAGGCCGTGAAACTTGAGGATTCAAAAGAATCTGCAAAGTTGAATGACAATCAGTTTACCAAATTGGACGAACTTCTCACTCAAACACAGTTGTACTCAGAATTTTTGCTGGAGAAAATGGATGACATCACATTTAATGGAGTGGAGGAAGAGAATAAATCTATTGAGAAAAGTAATGTTCGTGGTTCAAAGAGGAAAGCTGCTCCACGTTATAATAATAGGAAGGCAAAAAGAGCTGTTGCAGCTATGCTGACTAGATCAAAAGAAGGTGAGCGGGACGAAGATGAGAACTTGACCGAGGAAGAAAGAATCGAGAAGGAGCAGAGTGAACTTGTACCTCTGTTGACTGGTGGCAAATTGAAGTCCTACCAACTCAAAGGTGTCAAATGGTTAATCTCATTATGGCAGAATGGGCTGAATGGAATCCTTGCAGATCAAATGGGGCTTGGTAAGACAATTCAAACCATTGGCTTCCTTGCACATCTGAAAGGGAAGGGACTGGATGGACCTTACTTAGTAATTGCTCCGCTTTCCACACTTTCAAATTGGATAAATGAAATATCGAGATTTGTGCCCACAGTGAGTGCTATTATTTATCATGGTAACAAAAAACAAAGGGAAGAGATTCGAAGAAAGTCCATGCCTAAAACAATTGGACCTAACTTCCCCATAGTGGTTACTTCTTATGAGATTGCAATGAGTGATGCTAAAAAAGTTTTGAGGCATTACAATTGGAAATATCTTGTCGTTGATGAGGGGCATAGGCTGAAAAACTCAAAATGCAAATTGCTGAAGGAATTGAAGTACATAACTGTTGAAAATAAACTGCTTCTTACTGGGACACCACTGCAGAATAATTTGGCAGAGCTTTGGTCGTTGTTGAACTTTATTTTACCAGATATTTTTTCGTCCAATGAAGAATTTGAGTCATGGTTTGATCTCTCTGGAAAGAGTCATGCTGAAGAACAAGAAGAAACACAAGAGAATAGAAAGGCCCAGGTGGTAGCAAAACTGCATGCAATACTGAGACCATTTCTACTTCGGAGAATGAAATCCGATGTTGAGCTAATGCTCCCTCGGAAGAAAGAAATTATATTGTATGCAACCATGACCGAGTGTCAGAAGAACTTTCAGGAACATTTAATTAACAAGACGTTGGAAAGTCATCTCTCCGAGAAGGGATCAGGCCATGTTTTGAAAGGAAAGCTTAATAATTTGATGGTCCAGCTTCGGAAAAATTGCAACCATCCTGACCTCCTGGAATCAGTTTTTGATGAATCATATACATATCCTCCTGTAGAGCAGATAGTAGAGCAGTGTGGAAAATTTCGCTTACTGGATAGATTGTTGACACGACTGTTAGCACGCAAGCATAAAGTCCTTATCTTCTCTCAATGGACTAAGATTTTGGATATCATGGACTACTATTTTAGTGAGAAGGGATTTGAAGTTTGCAGAATAGATGGTAATGTGAAACTAGATGAAAGGAAAAGACAGATCCAGGAGTTCAATGATGTTAACAGCAACTACAGGATATTCATTCTAAGCACCCGAGCTGGTGGTCTGGGTATCAACCTTACTGCAGCAGATACCTGTATACTCTATGACAGCGATTGGAACCCACAAATGGATTTGCAGGCCATGGATAGATGTCACAGGATTGGTCAAACGAAACCCGTACACGTTTACAGACTTGCAACAGCTCAGTCTGTAGAGGGCCGCATCCTGAATAGGGCATTTAGTAAGTTGAAGCTTGAGCATGTGGTCATCGAGAAGGGGCAATTTCATCAGGAACGAACTAAACCCAATTCTGGAGCTATTATTGAGGAAGAGGATCTGCTGGCTCTACTAAGGAAGGAAGATTCTGCTGAAGATAAGATGATACAAACAGACATTAGCGATGCTGATTTGGAGCGTATTTTAGACCGCTCCGACCTGCTTCCCCCGTCTGGTTCAGACGACGAGAAATCAAAAGTTTCTGGTGATTTATACCCCCTCAAAGGGCCTGGTTGGGAGGTGGTGATACCAACTTCAACAGGAGGGCGAGCTTCAAGAGCGGGGGAACCGCCGTCTTTTCTTCCATTTCTTTCACTCAGGCGATTGCAAGGATTGGACGGAGGTGCTGAGGCAAGATGTGGCGCTGTGTTTCTCGTGGCCTTCGCGCTTCTTCTTCTTCCTTTTCCAGGAAATCGTCGCCTAATGATCACCTCAGATCTCACTTTTCTCGATTCTTCTCCGATTCGGTATGACCTTCCTTCATATGTCTTGGTTATTGAATATGAGCTTCGACTTTTGTCTGGATCTTTGATTTTAACGGCAGGTCGCTCGTCATACACTGTGGTTGATCACACATACGATGCGGTTGTGGTAGGAGCCGGTGGTGCAGGGCTTCGAGCTGCTATAGGATTGTCAGAACATGGATTTAATACTGCCTGCATTACTAAGCTTTTCCCAACTCGATCTCACACTGTTGCAGCTCAGGTACGGGGTATTCGGACTTATGGTAATGCTGTCTGTTATGTCTCACAAATTGGTAACTTACCATATGGCGGAGGTATTAATGCTGCACTGGGAAACATGACTGAGGATGATTGGAGGTGGCACATGTACGACACTGTCAAGGGGAGCGATTGGCTAGGTGATCAGGATGCCATTCAATACATGTGTAGAGAAGCACCAAAAGCAGTTATTGAGCTTGAGAATTATGGACTTCCATTTTCTCGTACTGAAGAGGGAAAAATATATCAACGTGCATTTGGTGGTCAGAGCCTCGACTTTGGAAAGGGTGGACAGGCATATCGTTGTGCATGTGCTGCAGACCGAACGGGGCATGCTTTATTGCATACTCTCTATGGCCAGGCTATGAAGCATAACACACAATTTTTTGTGGAATATTTTGCTTTGGATCTTTTAATGAATAGTGATGGTAGCTGCCAGGGAGTGATAGCATTAAATACAGAGGATGGTACACTACATCGGTTCCAAGCTGCATCAACAATTTTAGCTACTGGGGGTTATGGCAGAGCATATTTCTCTGCCACCTCTGCTCATACCTGTACTGGAGATGGAAATGCCATGGTTGCACGTGCTGGGCTTCCACTTGAGGATTTGGAGTTTGTGCAGTTTCATCCAACAGGAATATATGGTGCTGGATGCCTTATTACTGAAGGATCTCGTGGTGAAGGAGGCATTCTTAGGAACAGTGAAGGTGAGCGCTTTATGGAACGATATGCCCCAACAGCAAAGGATCTTGCATCAAGGGACGTTGTCTCAAGATCCATGACGATGGAAATTCGGGAGGGTCGTGGTGTAGGACCACTGAAGGACCACATCTATCTTCATTTAAATCACTTACCCCCTGAGGTACTGAAGGAGAGACTTCCGGGTATCTCAGAAACTGCTGCCATTTTTGCTGGCGTTGATGTTACCAAAGAGCCCATTCCAGTGTTACCTACAGTGCATTATAATATGGGTGGAATTCCAACTAATCATCATGGAGAGGTAGTTACAATCAAGGGCAACGATCCAGATGCTGTAATTCCAGGATTGATGGCTGCTGGCGAGGCAGCTTGTGCCTCGGTTCATGGTGCCAATAGGCTTGGTGCAAATTCGCTTTTGGACATTGTTGTCTTTGGACGAGCTTGTGCAAATAGGGTAGCAGAGATCAGGGCCAAGCAAAAGCCGTTGGAAAATGATGCTGGTGAGAAGACAATTGCATGGCTAGACAAATTAAGGAACGCAAATGGTTCACTTCCCACCTCAAATATTCGGTTGAACATGCAACGAATTATGCAAAACAATGCTGCTGTCTTCCGAACTCAGGAGACCTTGGAAGAAGGTTGCAAATTAATTGACAAGACATGGGAGAGTTTCCATGATGTGAAGGTCAAGGACAGGAGTTTAATATGGAACACTGATTTGATCGAGACAATTGAATTGGAAAATCTTTTGATCAATGCCTCTATTACCATGCACTCTGCTGAAGCCAGGAAAGAGAGCAGAGGAGCACATGCTCGTGAAGATTTCACAACAAGAGATGATGAGAACTGGATGAAGCACACATTGGGATTCTGGGAGAATGAGAAGGTCAGGCTGGACTATAGGCCAGTGCACATGAACACATTGGACGATGAGATGGAAACAATCCCTCCCAAGGCCCGTGTATACTGA 4443 43.78 MVALSDNSIKLTTSSDDSLGLEMALEEKPRADNSAESPTSVLEDEDICNGENEIKLEEKIILEAKNGDSSLISKEMAEEEQKLLEARVKDEEAVKLEDSKESAKLNDNQFTKLDELLTQTQLYSEFLLEKMDDITFNGVEEENKSIEKSNVRGSKRKAAPRYNNRKAKRAVAAMLTRSKEGERDEDENLTEEERIEKEQSELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYLVIAPLSTLSNWINEISRFVPTVSAIIYHGNKKQREEIRRKSMPKTIGPNFPIVVTSYEIAMSDAKKVLRHYNWKYLVVDEGHRLKNSKCKLLKELKYITVENKLLLTGTPLQNNLAELWSLLNFILPDIFSSNEEFESWFDLSGKSHAEEQEETQENRKAQVVAKLHAILRPFLLRRMKSDVELMLPRKKEIILYATMTECQKNFQEHLINKTLESHLSEKGSGHVLKGKLNNLMVQLRKNCNHPDLLESVFDESYTYPPVEQIVEQCGKFRLLDRLLTRLLARKHKVLIFSQWTKILDIMDYYFSEKGFEVCRIDGNVKLDERKRQIQEFNDVNSNYRIFILSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLATAQSVEGRILNRAFSKLKLEHVVIEKGQFHQERTKPNSGAIIEEEDLLALLRKEDSAEDKMIQTDISDADLERILDRSDLLPPSGSDDEKSKVSGDLYPLKGPGWEVVIPTSTGGRASRAGEPPSFLPFLSLRRLQGLDGGAEARCGAVFLVAFALLLLPFPGNRRLMITSDLTFLDSSPIRYDLPSYVLVIEYELRLLSGSLILTAGRSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQVRGIRTYGNAVCYVSQIGNLPYGGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEEGKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEYFALDLLMNSDGSCQGVIALNTEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGNDPDAVIPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAEIRAKQKPLENDAGEKTIAWLDKLRNANGSLPTSNIRLNMQRIMQNNAAVFRTQETLEEGCKLIDKTWESFHDVKVKDRSLIWNTDLIETIELENLLINASITMHSAEARKESRGAHAREDFTTRDDENWMKHTLGFWENEKVRLDYRPVHMNTLDDEMETIPPKARVY 1480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3550543 3565256 + CmoCh16G007120.1 Cmo16g00712 399747

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00712 1480 Pfam Helicase conserved C-terminal domain 536 646 IPR001650 -
Cmo16g00712 1480 Pfam SNF2-related domain 214 510 IPR000330 GO:0005524|GO:0140658
Cmo16g00712 1480 SMART helicmild6 562 646 IPR001650 -
Cmo16g00712 1480 Gene3D - 212 441 IPR038718 -
Cmo16g00712 1480 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 223 391 IPR014001 -
Cmo16g00712 1480 MobiDBLite consensus disorder prediction 1 43 - -
Cmo16g00712 1480 Gene3D - 446 740 IPR027417 -
Cmo16g00712 1480 Gene3D - 1320 1430 - -
Cmo16g00712 1480 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 536 699 IPR001650 -
Cmo16g00712 1480 Pfam FAD binding domain 877 918 IPR003953 -
Cmo16g00712 1480 Pfam FAD binding domain 941 1296 IPR003953 -
Cmo16g00712 1480 CDD SF2_C_SNF 522 656 - -
Cmo16g00712 1480 SUPERFAMILY FAD/NAD(P)-binding domain 868 1319 IPR036188 -
Cmo16g00712 1480 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 1128 1246 IPR027477 -
Cmo16g00712 1480 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 1138 1241 IPR027477 -
Cmo16g00712 1480 Pfam Fumarate reductase flavoprotein C-term 1349 1480 IPR015939 GO:0016491
Cmo16g00712 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 440 IPR027417 -
Cmo16g00712 1480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 442 734 IPR027417 -
Cmo16g00712 1480 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 855 1480 - -
Cmo16g00712 1480 MobiDBLite consensus disorder prediction 1 19 - -
Cmo16g00712 1480 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 942 1480 IPR011281 GO:0006099|GO:0016627|GO:0050660
Cmo16g00712 1480 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 1339 1480 IPR037099 GO:0016491
Cmo16g00712 1480 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 877 1480 IPR014006 GO:0016627|GO:0022900|GO:0050660
Cmo16g00712 1480 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 855 1480 IPR030664 -
Cmo16g00712 1480 Coils Coil 74 94 - -
Cmo16g00712 1480 SMART ultradead3 207 402 IPR014001 -
Cmo16g00712 1480 Gene3D - 877 1307 IPR036188 -
Cmo16g00712 1480 Gene3D succinate dehydrogenase protein domain 1431 1480 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00712 K19001 HELLS, DDM1; ATP-dependent DNA helicase - csv:101214753 1342.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00837 Cmo16g00712 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00043 Cmo-Chr3:764426 Cmo16g00712 Cmo-Chr16:3550543 4.72E-35 dispersed
Cmo04g02840 Cmo-Chr4:20299305 Cmo16g00712 Cmo-Chr16:3550543 5.21E-66 dispersed
Cmo07g01381 Cmo-Chr7:7880127 Cmo16g00712 Cmo-Chr16:3550543 2.14E-36 dispersed
Cmo08g01181 Cmo-Chr8:7509730 Cmo16g00712 Cmo-Chr16:3550543 1.74E-138 dispersed
Cmo15g00345 Cmo-Chr15:1606977 Cmo16g00712 Cmo-Chr16:3550543 2.78E-09 dispersed
Cmo16g00712 Cmo-Chr16:3550543 Cmo17g00241 Cmo-Chr17:1421492 2.29E-127 dispersed
Cmo04g00837 Cmo-Chr4:4166756 Cmo16g00712 Cmo-Chr16:3550543 1.06E-113 transposed
Cmo04g00839 Cmo-Chr4:4183510 Cmo16g00712 Cmo-Chr16:3550543 0 transposed
Cmo16g00712 Cmo-Chr16:3550543 Cmo04g00836 Cmo-Chr4:4161753 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g955 Blo04g00920 Blo16g00039 . . Bpe15g00433 Bpe13g00452 . . Cmo04g00837 Cmo16g00712 . . . . . . . . . . . . . . . . . . . . . Cone8ag0805 . . . . . Chy07g01291 . . . Bda11g01874 . . . Bma03g00992 Bma06g00128 . . . Cma16g00655 . . . . Cpe14g00559 . . . . . . . Cla07g00866 Cam07g0939 Cec07g1004 Cco07g0982 Clacu07g0912 Cmu07g0912 Cre07g1283 . Csa04g00510 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009588 2 0 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11295 PF00890 FAD_binding_2 2.50E-103 CL0063 Cmo TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00712 Cmo_Chr16 FPKM 2.75964 2.930046 2.914407 4.15765 3.751643 3.653216 4.32281 3.205337 2.855421 3.598917