Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00717 ATGTTTCGTTCAAAGAAGCATTCTCAAAGTCATAATCACCATAATAATGATTCTACACAAGAAGACGGGAAGATCAATGAACTTAGGGCTGCTCTTGGGCCTCTGTCTAGTCGAAGTTCAAAGTATTGCACCGATGCATGTCTGAGGAGATATTTGATAGCTCGAAACTGGAATGTTGAGAAGGCAAGGAAAATGCTAGAAGAGACGCTCAAGTGGAGGGCAGCTTACAAGCCCGAAGAAATCCGTTGGCATGAAGTAGCATTTGAAGGCGAGACTGGAAAAGTGTCGAGAGCAGATTTTTGCGATCGACAGGGAAGATCTGTGCTCATAATGAGACCTGGAATGCAGAACACAACTCCATCAGAAGTCAGCGTGCGGCATCTAGTCTATCTTCTAGAGAATGCGATTCTGAACCTTGTTGAGGGTCAAGAACAAATGTGTTGGTTAATAGATTTCACCGGATTTACAATGAAAACCAATGTCTCCGTCAAAATAGCCTCCGATGTTATCAATATCTTGCAGAACCATTACCCGGAAAGACTTGCCGTTGCATTCCTCTACAATCCACCCAAGATTTTTCAAGCCTTCTGGAAGGCTATCAAGTACTTCTTAGATCCAAAGACATCTCAAAAGGTAAAGTTTGTAAATCCCAAAGACAAAGGAAGCGTGGAGCTGATGAAATCATACTTCGACATGGAAAACCTTCCCAGTGTGTTTGGGGGTAAAGCCACACTCGAGTATGATCACCAGCAGTTCTCTCAGATGATGGCCCAAGACGAGCTTAAAGCTGCACTAGTGTGGGGCCTTGATGAGAAGGCCCACCATATCACAAATGGGCCTTCTTCTGGCCCAGAAGTTGCACCAGAGCCCATTACTGCAACAAACTAA 888 44.37 MFRSKKHSQSHNHHNNDSTQEDGKINELRAALGPLSSRSSKYCTDACLRRYLIARNWNVEKARKMLEETLKWRAAYKPEEIRWHEVAFEGETGKVSRADFCDRQGRSVLIMRPGMQNTTPSEVSVRHLVYLLENAILNLVEGQEQMCWLIDFTGFTMKTNVSVKIASDVINILQNHYPERLAVAFLYNPPKIFQAFWKAIKYFLDPKTSQKVKFVNPKDKGSVELMKSYFDMENLPSVFGGKATLEYDHQQFSQMMAQDELKAALVWGLDEKAHHITNGPSSGPEVAPEPITATN 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3585446 3588871 + CmoCh16G007170.1 Cmo16g00717 399752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00717 295 Pfam CRAL/TRIO, N-terminal domain 43 68 IPR011074 -
Cmo16g00717 295 PANTHER DIVERGENT CRAL/TRIO DOMAIN PROTEIN 8 292 - -
Cmo16g00717 295 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 102 247 IPR001251 -
Cmo16g00717 295 SMART CRAL_TRIO_N_2 44 69 IPR011074 -
Cmo16g00717 295 SUPERFAMILY CRAL/TRIO N-terminal domain 11 85 IPR036273 -
Cmo16g00717 295 MobiDBLite consensus disorder prediction 1 23 - -
Cmo16g00717 295 PANTHER GH16843P 8 292 - -
Cmo16g00717 295 Pfam CRAL/TRIO domain 101 241 IPR001251 -
Cmo16g00717 295 MobiDBLite consensus disorder prediction 276 295 - -
Cmo16g00717 295 SUPERFAMILY CRAL/TRIO domain 83 256 IPR036865 -
Cmo16g00717 295 Gene3D - 3 273 IPR036865 -
Cmo16g00717 295 SMART sec14_4 89 244 IPR001251 -
Cmo16g00717 295 CDD SEC14 102 242 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00717 - - - csv:101209886 526.554
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g00781 Cmo16g00717 CCT
Cmo03g00781 Cmo16g00717 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01467 Cmo-Chr1:11412068 Cmo16g00717 Cmo-Chr16:3585446 2.62E-85 dispersed
Cmo01g01968 Cmo-Chr1:13964712 Cmo16g00717 Cmo-Chr16:3585446 4.17E-141 dispersed
Cmo03g00219 Cmo-Chr3:3472473 Cmo16g00717 Cmo-Chr16:3585446 5.24E-54 dispersed
Cmo06g01417 Cmo-Chr6:10312442 Cmo16g00717 Cmo-Chr16:3585446 1.22E-19 dispersed
Cmo06g01710 Cmo-Chr6:11770124 Cmo16g00717 Cmo-Chr16:3585446 2.36E-23 dispersed
Cmo14g01428 Cmo-Chr14:11648591 Cmo16g00717 Cmo-Chr16:3585446 2.20E-21 dispersed
Cmo14g01743 Cmo-Chr14:13578943 Cmo16g00717 Cmo-Chr16:3585446 1.72E-18 dispersed
Cmo16g00717 Cmo-Chr16:3585446 Cmo03g00781 Cmo-Chr3:6442031 1.46E-144 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g966 . Blo16g00041 Bda04g00051 . . Bpe13g00448 . . . Cmo16g00717 Cma03g00753 . Car03g00688 . Sed14g1112 . Cpe10g00609 Bhi03g01289 Tan03g1975 Cmetu08g2019 . Hepe04g1507 . . Cla01g01903 Cam01g1992 Cec04g1644 Cco04g1707 Clacu01g2012 Cmu01g1883 Cre04g1561 Cone8ag0807 . . Cone9ag1544 Lsi01g00678 . Chy07g01296 Cme08g00844 Blo05g00795 . Bda11g01871 . . Bpe06g00046 . Bma06g00125 . Cmo03g00781 . Cma16g00660 . . . . Cpe14g00563 . . . . . . . Cla07g00874 Cam07g0946 Cec07g1013 Cco07g0991 Clacu07g0921 Cmu07g0921 Cre07g1290 Lsi07g00198 Csa06g03236 Chy02g00653 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001039 2 5 1 1 2 3 2 3 3 3 3 3 3 3 3 3 3 3 3 3 3 2 3 3 2 3 3 3 3 2 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00717 Cmo_Chr16 FPKM 2.095534 3.228067 12.908626 13.139651 67.234947 76.937881 72.019547 28.410408 27.486876 28.165665