Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00726 ATGCACAAGCGAAATCTCACAACTACCGTCAGCCCCGTCGGCAGCCCAACGTCCGACAACATATCCGACAGCTCCACTAAAGAACAGGACAGGTTTCTTCCGATCGCAAACGTGAGCCGAATCATGAAAAAATCCCTTCCTGCCAACGCCAAAATCTCAAAAGAAGCTAAAGAGACCGTCCAGGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGATAAGTGTCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTGTGGGCTATGACCACTTTGGGATTCGAAAATTACGTCGGCCCTTTGAAGATTTATCTCAACAAATACAGAGAAACAGAGGAGGAGAAACATTCTTTAGCCAGACAGGACGATCCCTCCCCGTCACCGACGAAATCCACCGCCGTCGAACAGATTATCGGTGGGAAATCGGCCAATTCGGTGATGGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTGGGGAATCATAAGAGTTTGAATATAATCGATGGCGTTGGATTTGGGGAAAGTTTGAGGGGTAAATATGAGTGGAGTCCCTGA 579 47.67 MHKRNLTTTVSPVGSPTSDNISDSSTKEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVGPLKIYLNKYRETEEEKHSLARQDDPSPSPTKSTAVEQIIGGKSANSVMDFQNLNSGFYSLGNHKSLNIIDGVGFGESLRGKYEWSP 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3621082 3621660 - CmoCh16G007260.1 Cmo16g00726 399761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00726 192 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 14 171 - -
Cmo16g00726 192 Coils Coil 108 128 - -
Cmo16g00726 192 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 171 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cmo16g00726 192 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Cmo16g00726 192 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Cmo16g00726 192 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Cmo16g00726 192 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Cmo16g00726 192 SUPERFAMILY Histone-fold 29 137 IPR009072 GO:0046982
Cmo16g00726 192 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cmo16g00726 192 Gene3D Histone, subunit A 19 154 IPR009072 GO:0046982
Cmo16g00726 192 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00726 Cmo-Chr16:3621082 Cmo20g00682 Cmo-Chr20:3345325 7.01E-57 dispersed
Cmo16g00726 Cmo-Chr16:3621082 Cmo04g00847 Cmo-Chr4:4228134 1.56E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11297 PF00808 CBFD_NFYB_HMF 4.90E-27 CL0012 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00726 K08065 - csv:116406241 321.242