Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00731 ATGTCTATGTTTGAGCTCACTAATTACCCTAAACATGCTCCTTTTTCAATCCAACCTTCTTCGTCCTCCTCTCTTCCAGGAAGGGTGGGATTGTACGAGCCTATCCACCCAATTGGAATGTGGGGAGAAACTTTCCGAACCAATTTAGACGCACCATCTCTTCTAATGGAGGCCGATACAAAGCTGGAAAATCAGTCGGATGATGCCTCGCTCGGCTCACTTGGAGATCCTCACATTTATAACCAAAAAGATACCAAACGGAATGAAAAGATTCAAAGACGGCTCGCACAAAATCGGGAAGCAGCTCGCAAAAGTCGCCTGCGAAAAAAGGCCTATATTAAGCAATTGGAATCGAGCCGCTTAAAACTCATCCAATTGGAGCAAGAGCTTGAAAAAGCAAGACAACAAGGTCTGTTGGCTGGATCCCGATTTGATAATAACCCGTCGGGTTTATCAGGAACCACAAATTCAGGCATCTCTGCATTTGAATCAGAGTATGAGCAATGGGTAGAAGAGCAGAACAGGCAGATATGTGATCTGAGGACTGCAGTGCATGCTGATATTACTGATATCGAGCTTCGAATACTCGTAGAAAATGCAATGAGACATTACTTTAAATTCTTTCGCATGAAAGCTAAAGCTGCAAAAGCAGACGTCTCCTATATCATGTCAGGCATGTGGAAAACATCAGCTGAAAGACTTTTCTTATGGATAGGAGGATTTCGCCCTTCAGAACTTCTCAAGGTTTTGATACCTCAGCTGAAGATACTGACCGATCAACAAGTTTCCGAAACTAGTAGCCTTACGAAATCGTGTTTACAAGCAGAAGATGCTCTAAGACAGGGTATGGAAAAACTACAACAAAATCTATTTGAGAGCGTAGTGGCTGGTCAGCTGAGTGAAGGAAGTTATCCCCTACAGATGACTGCTGCAATGGAAAGATTAGAAGCACTCATTAGCTTTGTGAATCAGGCTGACCATCTACGACAGGAAACATTGCAACAGATGTACAAAATTCTAACAACTCGGCAATCTGCTCAAGGCCTTCTTATTCTTGGGGAGTTTTTTCAACGACTCCGAGCATTGAGCTTGCTTTGGGCTAATCGTCCTTGCGAGCCTACATAG 1125 43.47 MSMFELTNYPKHAPFSIQPSSSSSLPGRVGLYEPIHPIGMWGETFRTNLDAPSLLMEADTKLENQSDDASLGSLGDPHIYNQKDTKRNEKIQRRLAQNREAARKSRLRKKAYIKQLESSRLKLIQLEQELEKARQQGLLAGSRFDNNPSGLSGTTNSGISAFESEYEQWVEEQNRQICDLRTAVHADITDIELRILVENAMRHYFKFFRMKAKAAKADVSYIMSGMWKTSAERLFLWIGGFRPSELLKVLIPQLKILTDQQVSETSSLTKSCLQAEDALRQGMEKLQQNLFESVVAGQLSEGSYPLQMTAAMERLEALISFVNQADHLRQETLQQMYKILTTRQSAQGLLILGEFFQRLRALSLLWANRPCEPT 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3639103 3644204 - CmoCh16G007310.1 Cmo16g00731 399766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00731 374 Gene3D - 88 139 - -
Cmo16g00731 374 Pfam Seed dormancy control 176 251 IPR025422 GO:0006351|GO:0043565
Cmo16g00731 374 Coils Coil 109 136 - -
Cmo16g00731 374 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 93 108 IPR004827 GO:0003700|GO:0006355
Cmo16g00731 374 Pfam bZIP transcription factor 88 123 IPR004827 GO:0003700|GO:0006355
Cmo16g00731 374 PANTHER TRANSCRIPTION FACTOR TGA1 25 373 - -
Cmo16g00731 374 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 88 132 IPR004827 GO:0003700|GO:0006355
Cmo16g00731 374 SUPERFAMILY Leucine zipper domain 90 132 IPR046347 GO:0003700|GO:0006355
Cmo16g00731 374 SMART brlzneu 86 168 IPR004827 GO:0003700|GO:0006355
Cmo16g00731 374 PANTHER TRANSCRIPTION FACTOR TGA9 25 373 - -
Cmo16g00731 374 ProSiteProfiles DOG1 domain profile. 159 369 IPR025422 GO:0006351|GO:0043565
Cmo16g00731 374 MobiDBLite consensus disorder prediction 65 87 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g03125 Cmo-Chr4:21686648 Cmo16g00731 Cmo-Chr16:3639103 2.37E-118 dispersed
Cmo15g00039 Cmo-Chr15:247678 Cmo16g00731 Cmo-Chr16:3639103 1.51E-119 dispersed
Cmo16g00731 Cmo-Chr16:3639103 Cmo06g00021 Cmo-Chr6:139954 3.99E-101 dispersed
Cmo16g00731 Cmo-Chr16:3639103 Cmo04g00850 Cmo-Chr4:4241780 7.81E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11300 PF14144 DOG1 1.90E-28 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00731 K14431 - csv:116401613 610.527