Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00738 ATGGGGCGAGTGAAGCTACAGATCAAAAGAATCGAAAACAACACCAATCGCCAGGTCACCTATTCCAAACGCCGCAATGGCCTCATCAAAAAGGCATACGAACTCTCTGTTCTTTGCGATATCGATATCGCACTCATCATGTTCTCTCCTTCCAGCCGCCTCAGCCATTTCTCCGGCCGCCGCAGAATCGAAGATGTTCTTGCTCGTTACATAAATTTGCCTGATCATGACAGAGGAAGTGTTGTTCAGAATAAAGAGTTTTTACTTGGAACACTGAATAATCTGAAGACAGAGAACGATATTGCACTTCAACTTGCCAATCCTACATCAAGCAATTCCAATGTCGAGGAGCTTCAACAAGAGGTTGCTACGTTGAGACATGAGCTTCAACTTGCTGAACAGCAGCTTAGGTTATTCGAACCGGATCCTTTTTCGTTTACATCGAATGGTGAAATAGAGTCATGTGAGAAGAATTTGCTCGACACGTTGGCACGGATCGCTCAGAGGAAGAAAGATGTATTGAATAGTCATTTATCTCCGTATGATCCACCGAATGGTATTCAGTTATATTTGGATTCACAAGATGGAATAGCGTCTTCGTTTGAAAACGATGTAGCGAATTGGCTACCAGAAAACGGGCAGAATCAGAATCAAATTTGTGTGGCGGCTGAGTCGTCTTCGATTCCTCAAAGTGGTCAATATCCTGGTACGGTTTATGATCAAGTAACACAAGCGGGCAACATGAATGTCGGGTCATGCAACATTGGTGGGTGCGACATGGGCAACCCGAACGACGATGGGTACTCACCATGGCATCACAACTACACGACGTCGCAGCTCCTCTCCTCATTCATACCACAAGCTTCATTTGAAACTCTCAAGCATGAGATTGGAGGGCCTTGCATGAACACGATGATGTCGCAGCAACAAGTTGATAGCATTTCTAATGGGAATCAAATGCCTCCAAGTGATGAAAGTGCTAATTATGATAATGGCAAGTTGCCTCAACTCAATGGGGATTGA 1023 44.57 MGRVKLQIKRIENNTNRQVTYSKRRNGLIKKAYELSVLCDIDIALIMFSPSSRLSHFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIALQLANPTSSNSNVEELQQEVATLRHELQLAEQQLRLFEPDPFSFTSNGEIESCEKNLLDTLARIAQRKKDVLNSHLSPYDPPNGIQLYLDSQDGIASSFENDVANWLPENGQNQNQICVAAESSSIPQSGQYPGTVYDQVTQAGNMNVGSCNIGGCDMGNPNDDGYSPWHHNYTTSQLLSSFIPQASFETLKHEIGGPCMNTMMSQQQVDSISNGNQMPPSDESANYDNGKLPQLNGD 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3684983 3686962 + CmoCh16G007380.1 Cmo16g00738 399773

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00738 340 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo16g00738 340 Coils Coil 115 135 - -
Cmo16g00738 340 MobiDBLite consensus disorder prediction 311 340 - -
Cmo16g00738 340 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo16g00738 340 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00738 - - - csv:101222576 556.984
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00833 Cmo-Chr1:4449565 Cmo16g00738 Cmo-Chr16:3684983 9.88E-26 dispersed
Cmo16g00738 Cmo-Chr16:3684983 Cmo13g00843 Cmo-Chr13:7796051 1.09E-23 dispersed
Cmo16g00738 Cmo-Chr16:3684983 Cmo18g01160 Cmo-Chr18:11794852 8.78E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo18g01160 . 1 340 Type I MADS-box Gene Family AT2G03060 50.5 1.1e-91 334.3
Cmo01g00833 . 1 262 Type I MADS-box Gene Family AT2G03060 50.8 4.2e-62 236.1
Cmo04g00457 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.5e-37 154.1
Cmo04g00457 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.5e-49 192.2
Cmo16g00738 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.8e-54 208.8
Cmo10g01262 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.8e-53 204.9
Cmo13g00420 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 2.0e-44 177.2
Cmo18g01160 . 1 340 Type I MADS-box Gene Family AT2G03060 50.5 1.1e-91 334.3
Cmo01g00833 . 1 262 Type I MADS-box Gene Family AT2G03060 50.8 4.2e-62 236.1
Cmo04g00457 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.5e-37 154.1
Cmo04g00457 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.5e-49 192.2
Cmo16g00738 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.8e-54 208.8
Cmo10g01262 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.8e-53 204.9
Cmo13g00420 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 2.0e-44 177.2
Cmo18g01160 . 1 340 Type I MADS-box Gene Family AT2G03060 50.5 1.1e-91 334.3
Cmo01g00833 . 1 262 Type I MADS-box Gene Family AT2G03060 50.8 4.2e-62 236.1
Cmo04g00457 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.5e-49 192.2
Cmo10g01262 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.8e-53 204.9
Cmo13g00420 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 2.0e-44 177.2
Cmo04g00457 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.5e-37 154.1
Cmo16g00738 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.8e-54 208.8
Cmo18g01160 . 1 340 Type I MADS-box Gene Family AT2G03060 50.5 1.1e-91 334.3
Cmo01g00833 . 1 262 Type I MADS-box Gene Family AT2G03060 50.8 4.2e-62 236.1
Cmo04g00457 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 5.5e-49 192.2
Cmo10g01262 . 1 157 Type I MADS-box Gene Family AT5G48670 65.6 8.8e-53 204.9
Cmo13g00420 . 1 170 Type I MADS-box Gene Family AT5G48670 54.1 2.0e-44 177.2
Cmo04g00457 . 4 159 Type I MADS-box Gene Family AT2G24840 54.1 1.5e-37 154.1
Cmo16g00738 . 1 211 Type I MADS-box Gene Family AT1G77950 54.0 4.8e-54 208.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008266 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11301 PF00319 SRF-TF 4.00E-24 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00738 Cmo_Chr16 FPKM 0.101655 0.332089 0.0 0.0 0.197053 0.450916 0.201486 0.17961 0.176336 0.40224