Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00738 ATGGGGCGAGTGAAGCTACAGATCAAAAGAATCGAAAACAACACCAATCGCCAGGTCACCTATTCCAAACGCCGCAATGGCCTCATCAAAAAGGCATACGAACTCTCTGTTCTTTGCGATATCGATATCGCACTCATCATGTTCTCTCCTTCCAGCCGCCTCAGCCATTTCTCCGGCCGCCGCAGAATCGAAGATGTTCTTGCTCGTTACATAAATTTGCCTGATCATGACAGAGGAAGTGTTGTTCAGAATAAAGAGTTTTTACTTGGAACACTGAATAATCTGAAGACAGAGAACGATATTGCACTTCAACTTGCCAATCCTACATCAAGCAATTCCAATGTCGAGGAGCTTCAACAAGAGGTTGCTACGTTGAGACATGAGCTTCAACTTGCTGAACAGCAGCTTAGGTTATTCGAACCGGATCCTTTTTCGTTTACATCGAATGGTGAAATAGAGTCATGTGAGAAGAATTTGCTCGACACGTTGGCACGGATCGCTCAGAGGAAGAAAGATGTATTGAATAGTCATTTATCTCCGTATGATCCACCGAATGGTATTCAGTTATATTTGGATTCACAAGATGGAATAGCGTCTTCGTTTGAAAACGATGTAGCGAATTGGCTACCAGAAAACGGGCAGAATCAGAATCAAATTTGTGTGGCGGCTGAGTCGTCTTCGATTCCTCAAAGTGGTCAATATCCTGGTACGGTTTATGATCAAGTAACACAAGCGGGCAACATGAATGTCGGGTCATGCAACATTGGTGGGTGCGACATGGGCAACCCGAACGACGATGGGTACTCACCATGGCATCACAACTACACGACGTCGCAGCTCCTCTCCTCATTCATACCACAAGCTTCATTTGAAACTCTCAAGCATGAGATTGGAGGGCCTTGCATGAACACGATGATGTCGCAGCAACAAGTTGATAGCATTTCTAATGGGAATCAAATGCCTCCAAGTGATGAAAGTGCTAATTATGATAATGGCAAGTTGCCTCAACTCAATGGGGATTGA 1023 44.57 MGRVKLQIKRIENNTNRQVTYSKRRNGLIKKAYELSVLCDIDIALIMFSPSSRLSHFSGRRRIEDVLARYINLPDHDRGSVVQNKEFLLGTLNNLKTENDIALQLANPTSSNSNVEELQQEVATLRHELQLAEQQLRLFEPDPFSFTSNGEIESCEKNLLDTLARIAQRKKDVLNSHLSPYDPPNGIQLYLDSQDGIASSFENDVANWLPENGQNQNQICVAAESSSIPQSGQYPGTVYDQVTQAGNMNVGSCNIGGCDMGNPNDDGYSPWHHNYTTSQLLSSFIPQASFETLKHEIGGPCMNTMMSQQQVDSISNGNQMPPSDESANYDNGKLPQLNGD 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3684983 3686962 + CmoCh16G007380.1 Cmo16g00738 399773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00738 340 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo16g00738 340 Coils Coil 115 135 - -
Cmo16g00738 340 MobiDBLite consensus disorder prediction 311 340 - -
Cmo16g00738 340 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo16g00738 340 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00833 Cmo-Chr1:4449565 Cmo16g00738 Cmo-Chr16:3684983 9.88E-26 dispersed
Cmo16g00738 Cmo-Chr16:3684983 Cmo13g00843 Cmo-Chr13:7796051 1.09E-23 dispersed
Cmo16g00738 Cmo-Chr16:3684983 Cmo18g01160 Cmo-Chr18:11794852 8.78E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11301 PF00319 SRF-TF 4.00E-24 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00738 - - csv:101222576 556.984