Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00750 ATGATGGTGGAATTCCATGGAGAAATCCGAAGCTCCGGCGATGGAGACGAGCAAGACAAGGAAGAGGAACTTAGCTACGATGATCTCAAGAAACGGATGTGGAAAGATAGACAGAGGATGAAGCAGCTGAAGGAGAAGCGGGATACTGAAGAACCTGAATCCACCGCTAGAGAAGAAGCCTCTCGCCGGAAAAAAATGGCCAGAGCTCAAGATTCGATCCTTAAGTACATGGATAAGATAATGGACGCTTGCAAGGCAAAAGGGTTTGTTTATGGGATCGTTCCGGAGAAGGGGAAACCAGTCACCGGCTCCTCGGAGAGCCTCCGGGAGTGGTGGCGGGACGACGTCCGGTTCGAACAAGATGCTCCCTTAGCCATAGCTCAATTCCTCCCGAAAGTTCTCGAAGAAACAGGGCTCGATTCGGAGTCGTTTTTGCACATGCTTCATGATTTACAGGACACAACATTGGGGTCGATTCTCTCTGCTTTGATTCAACACTGTATTCCGCCACAGAGGAAATTCCCACTTGAGAAGGGTTTAGCGCCGCCGTGGTGGCCGACGGGGAATGAGCTTTGGTGGGGTGAACAGGGTGCTGCTGGTGGACATGGCGTTCCGCCGTATAAAAAGCCTCACGATCTCAAAAAGGCATGGAAAATTAGTGTCTTGGCAGCAGTGATCAAACATATGTCCCCTGATTTGGACAATATGAGGAAATTGGTTCGACAATCGAAGAATTTACAAGCGAAAATGACGGCAAAGGAGACGCTTACGTGGGCTAAAGTCGTGAATCAAGAAGAATCCCTCTTGCAGCTAACAAAAAAAAGCCTCAAAATCACATCCGTCGAAGACGGACATGACGAAAACAGTGAAGAACAGGACGCCGGTGGGATTATTACGAAACGTAAGTATATGTTCGAACAAGTAGCTGCAGCAGCAGCCGATTCGGCGCTGTACGCTTGTCAGAACCAACGTTGCCCACAGAGCGAGGCGCCGATGGGATTCGCCGACAAGAACGCAAGAACAGAGCATGAGACGCAGTGCATTTACAGAGAAGCAGAGGATGAGAACATCGACACGCATTTGAAGAGCGTGGTGGAGTGGATGAACTGGGAGCTGTCGAGGGCGGAGCCAAGCAGCGAGGAGGGGAGGAGCGAAGACGCCGTAGATGGGTCCGGCAGCAGCACGGTGGAGAATTACGGGAGCAGGTACTGGAAGGGCGGCGTGGGAGAGGCGGCGGTGGATGAGGCGTTTGAGATGCATAGAGCGAGTATGGATTTGAATGCGAGTCCGGCGGAGGATTTGGGTGGTGGGCAACAAGATGCGACTTCCGTTTGGGATTTGATATATGAATGGGCTGAAGACTAA 1365 51.36 MMVEFHGEIRSSGDGDEQDKEEELSYDDLKKRMWKDRQRMKQLKEKRDTEEPESTAREEASRRKKMARAQDSILKYMDKIMDACKAKGFVYGIVPEKGKPVTGSSESLREWWRDDVRFEQDAPLAIAQFLPKVLEETGLDSESFLHMLHDLQDTTLGSILSALIQHCIPPQRKFPLEKGLAPPWWPTGNELWWGEQGAAGGHGVPPYKKPHDLKKAWKISVLAAVIKHMSPDLDNMRKLVRQSKNLQAKMTAKETLTWAKVVNQEESLLQLTKKSLKITSVEDGHDENSEEQDAGGIITKRKYMFEQVAAAAADSALYACQNQRCPQSEAPMGFADKNARTEHETQCIYREAEDENIDTHLKSVVEWMNWELSRAEPSSEEGRSEDAVDGSGSSTVENYGSRYWKGGVGEAAVDEAFEMHRASMDLNASPAEDLGGGQQDATSVWDLIYEWAED 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3765531 3766895 + CmoCh16G007500.1 Cmo16g00750 399785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00750 454 Gene3D - 138 276 IPR023278 GO:0003700|GO:0005634
Cmo16g00750 454 Gene3D - 55 135 IPR023278 GO:0003700|GO:0005634
Cmo16g00750 454 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 16 450 IPR006957 GO:0005634
Cmo16g00750 454 MobiDBLite consensus disorder prediction 375 394 - -
Cmo16g00750 454 SUPERFAMILY DNA-binding domain of EIN3-like 145 268 IPR023278 GO:0003700|GO:0005634
Cmo16g00750 454 MobiDBLite consensus disorder prediction 1 64 - -
Cmo16g00750 454 PANTHER ETHYLENE INSENSITIVE 3-LIKE 5 PROTEIN 16 450 - -
Cmo16g00750 454 Coils Coil 26 46 - -
Cmo16g00750 454 MobiDBLite consensus disorder prediction 24 64 - -
Cmo16g00750 454 MobiDBLite consensus disorder prediction 1 17 - -
Cmo16g00750 454 Pfam Ethylene insensitive 3 27 266 IPR006957 GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00844 Cmo-Chr11:4288727 Cmo16g00750 Cmo-Chr16:3765531 8.02E-97 dispersed
Cmo15g00557 Cmo-Chr15:2663581 Cmo16g00750 Cmo-Chr16:3765531 1.34E-105 dispersed
Cmo16g00750 Cmo-Chr16:3765531 Cmo04g00869 Cmo-Chr4:4343817 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11302 PF04873 EIN3 2.40E-109 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00750 K14514 - csv:101210698 693.73