Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00763 ATGGCGGCTTGTTTTAGTTTCTCATCCACCTTGAACTCGTGTTTCCGGCGCTCCTTTTCTAGGGCAGGCCTCAAAGCCATCACTACTGATCTATGCGATGGAACGATCATCCACTGTTGGGCGCCCAAATTCAGAAGAGATACGAAACCTAATTTGCTTCTCCTCCATGGATTTGGAGCCAACGCAATGTGGCAATGGAACAAGTTCGTATCGCCGATGATTCGGTTCTTCAATGTCTACGTTCCTGACCTAATTTTCTTCGGCAATTCGTACACAACTCGTCCGGAGAGGACCGAGTCCTTTCAAGCTCTCTGTATGATGCGATTAATGGATTCGCTCGATGTTCAGACGGTGAATGTCGTTGGAATTAGCTACGGCGGCTTCGTAGCATACAGTATGGCGGCTCAATTTCCAGAGCGATTGGAGAAATTGGTGCTCTGTTGTACCGGCGTTTGCTTGGAAGAGAAAGATATGGCGGACGGGATGTTCGTCGTGAAAAACATCGATGAGGCCGTCGATATTTTACTGCCTCAAACGCCGGCGAAGCTCAAGGAACTCATCCGCCTCACCTTCGTCAAGCCTGCTCGAGTTTTGCCTACTTTCATTATCAACGATTTCATCAATGTGATGTGCACAGAGTACAAGCAAGAGAAAGAAGAGTTGATCAAACAATTACTCAAGGATCGGACCTTATCTAATCTTCCCAAGATCGATAAGGCAGTTGGGGGAAAAGGCCGAATTAGTGGTCGTAAAGGAAGCAGGGCATGCGTTCAGTGCAGAGAAGCCAAGAGAAATTCGTTTACCGGTTTCCGGCGGGTAATCTCCACTAGATCCGTTCTGTTCTATCGTAGCCGACGGCTGGTATCTAAGGTTTATGTTGGTTCGCCCGCCCTAAGCATAAGCATAACTCAACTGTCTATGAAGCATATAGTGAAAATTTTGACATTGTTGGTGGCCGTATCAGCTCTATGGATTGGTCTCTTGCAGGCATCTATAATACCACATGGTCATGCTTGGCTGTTACCCATCTATTTTATCGTCTCCCTGGGATGCTATGGCCTATTGATGGTTGGAATCGGTCTAATGACATTCCCAACATGTCCTAGAGAAGGCCTGTTGTTACAGCAGGACATTGATGAGGCCAAAGAGTACCTTAAACACAAAGGGGTTGACATAAATTCTAATTGA 1188 46.55 MAACFSFSSTLNSCFRRSFSRAGLKAITTDLCDGTIIHCWAPKFRRDTKPNLLLLHGFGANAMWQWNKFVSPMIRFFNVYVPDLIFFGNSYTTRPERTESFQALCMMRLMDSLDVQTVNVVGISYGGFVAYSMAAQFPERLEKLVLCCTGVCLEEKDMADGMFVVKNIDEAVDILLPQTPAKLKELIRLTFVKPARVLPTFIINDFINVMCTEYKQEKEELIKQLLKDRTLSNLPKIDKAVGGKGRISGRKGSRACVQCREAKRNSFTGFRRVISTRSVLFYRSRRLVSKVYVGSPALSISITQLSMKHIVKILTLLVAVSALWIGLLQASIIPHGHAWLLPIYFIVSLGCYGLLMVGIGLMTFPTCPREGLLLQQDIDEAKEYLKHKGVDINSN 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3834609 3842012 + CmoCh16G007630.1 Cmo16g00763 399798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00763 395 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 3 240 - -
Cmo16g00763 395 Pfam Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) 307 391 IPR013174 GO:0006486
Cmo16g00763 395 PRINTS Alpha/beta hydrolase fold signature 134 147 IPR000073 -
Cmo16g00763 395 PRINTS Alpha/beta hydrolase fold signature 76 91 IPR000073 -
Cmo16g00763 395 PRINTS Alpha/beta hydrolase fold signature 120 133 IPR000073 -
Cmo16g00763 395 Pfam alpha/beta hydrolase fold 50 152 IPR000073 -
Cmo16g00763 395 PANTHER SI:DKEY-122A22.2 3 240 - -
Cmo16g00763 395 SUPERFAMILY alpha/beta-Hydrolases 28 199 IPR029058 -
Cmo16g00763 395 Gene3D alpha/beta hydrolase 9 241 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00763 - - - cmax:111483219 460.299
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00877 Cmo16g00763 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00853 Cmo-Chr3:6716588 Cmo16g00763 Cmo-Chr16:3834609 9.96E-118 dispersed
Cmo05g00523 Cmo-Chr5:2528091 Cmo16g00763 Cmo-Chr16:3834609 3.71E-89 dispersed
Cmo16g00678 Cmo-Chr16:3351269 Cmo16g00763 Cmo-Chr16:3834609 1.53E-27 dispersed
Cmo04g00879 Cmo-Chr4:4421308 Cmo16g00763 Cmo-Chr16:3834609 1.52E-55 transposed
Cmo16g00763 Cmo-Chr16:3834609 Cmo04g00877 Cmo-Chr4:4412637 1.29E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g977 Blo04g00917 . . . Bpe15g00428 . . . Cmo04g00877 Cmo16g00763 . . . . . . . . . . . . . . . . . . . . . Cone8ag0812 . . . . . Chy07g01245 . . . . . . . Bma03g00989 . Sed05g3619 . . Cma16g00706 . . . . Cpe14g00603 Bhi10g02010 Tan05g1308 Cmetu07g0234 . Hepe08g1015 . . . . . . . . . Lsi07g00150 Csa04g00453 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005013 3 4 1 1 2 0 2 1 1 0 1 1 1 1 1 2 1 1 0 1 0 1 0 0 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00763 Cmo_Chr16 FPKM 14.978183 14.461749 15.657974 16.672012 20.352467 17.960955 18.588005 18.766983 19.348824 17.717159