Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00796 ATGAAGCTTCTTCTGCTCCTCTTTCTCCTTCTTCACCTTCATACCCATCTCTCCCTTTCTTCTCACTTGCCTGAATTTCGTGCTCTTCTATCTCTCAAAACCTCCCTCTCCGATGACTCTCACTCGCCGCTTTCCAACTGGGATGCTGCTACTCACCACTGTACTTGGACTGGAGTCGTCTGCGATTTCCGCCGCCATGTCGTCGGCCTTGACCTTTCCGGATTGAATCTCTCCGGCACTCTTTCTCCTGACCTGGGTAGTCTTCGGTTTCTCGCGAATCTCTCTCTTGCGGCTAATCAGATTTCCGGCCCCATTCCGCCGGAGATCTCTGCTATCTCTCCGCTTAAATACCTTAACCTCTCTAACAATCTGATTAATGGAACCTTCCCTTTGCAACTCTCCTTGCTTACGAATCTGGAGGTTCTTGATTTGTATAACAATAATATGTCTGGGAACTTGCCGCTTGTGGTCATTGAGTTGCCGAATCTTCGCCATTTGCATCTCGGTGGGAACTTCTTCTCCGGTGTGATTCCGCCGGAGTATGGAACCTGGCAGTTCATGGAGTACTTGGCTGTTTCTGGAAATGAGCTTCAAGGTCCGATTCCGCCGGAGATTGGTAATTTAACGAGGCTTCGTGAACTTTATATTGGGTATTACAATACCTACGATGGCGGTTTGCCGCCGGAGATCGGAAACTTATCGGAGCTGGTTCGATTGGATGCGGCAAACTGTGGGTTAATGGGTGAGATTCCTCGCGAACTTGGAAAACTTCGGAAATTGGATACTCTGTTTCTTCAGGTGAACGTGTTTTCTGGGCCTTTGATTCCAGAGCTTGGGAGCTTAACCGAGTTGAAATCCATGGATTTGTCTAACAACATTCTTGTTGGGGAGATTCCGGACTCGTTCTCTCAACTCAAGAACTTGACGCTTTTGCATCTGTTCAGGAATAAGCTTCATGGAGCTATTCCACAGTTCATCGGTGAGTTAACGGAGCTGGAAGTGTTGCAGTTGTGGGAAAATAACTTCACTGGCTCTATTCCTTATAATTTGGGGAAGAATGGCAAGCTTGTTGTTCTTGACATTTCGTCGAACAAGTTGACTGGAACTTTACCTCCCGATATGTGCCATGGAAACCGGCTTCAAACTCTGATTACCCTCGGGAATTTCTTGTTCGGTCCAATCCCTGAATCTCTCGGTCGATGCGAATCATTGAGCCGTATTCGAATGGGGGAAAATTTTCTCAATGGTTCGATTCCAAAGGGTCTGTTCAGTTTGCCAAATCTTTCCCAAGTTGAGTTGCAGAACAATTTCCTCACCGGAGAGTTTCCGGTCACGGATTCTGTCTCTGCAAATCTCGGCCAAATTAGTCTCTCAAACAATCGCCTCTCGGGATCCCTTCCACCGATGGTTGGAAATTTCTCCGGTGTCCAGAAGCTTCTACTCGATGGGAATAAATTCTCCGGCCAAATCCCACCTGAAATCGGTCGATTACAGCAGTTATCGAAGATCGATTTCAGCCACAACAAATTCTCCGGCCAAATCGCCCCTGAAATCAGCCAATGTAAGCTCTTGACCTTCGTCGATCTCAGTCGCAACGAACTCTCCGGTGAGATTCCGAATGAAATCACCACAATGAGAATATTGAACTATCTGAATCTCTCAAGAAATCACTTAATCGGAAGCGTTCCTGCTTCAATATCCTCAATGCAGAGCTTAACATCCGTTGATTTTTCATATAACAATCTCTCCGGTTTAGTTCCGGGCACCGGCCAGTTTAGCTACTTCAACTACACCTCATTCCTAGGCAACCCAGATCTCTGCGGTCCATACTTAGGACCTTGCAGAAATGGCGTCGACAATGGCACTCACCCCCCTCATTTAAAACCCTCACTCTCTGCCTCTGTTAAGCTTCTGCTCGTCATCGTCTTACTCGTCTGCTCCATCGCCTTCGCAATCGCAGCAATCATCAAAGCTAGATCGCTAAAACGAGCGAGCGGCTCTCGCGCTTGGAAACTAACCGCATTCCAAAGACTAGATTTCACAGTCGATGACATTTTGAACTCCTTGAAAGAAGACAACATCATCGGAAAAGGAGGCGCTGGGATTGTTTACAAAGGTTTTATGCCGAGCGGTGATCATGTCGCCGTGAAAAGGCTTCCGGCAATGAGCCGTGGGTCGTCCCATGACCATGGATTCAACGCTGAGATACAAACTCTGGGGAGAATTAAACATCGCCACATCGTTAGATTATTGGGTTTCTGTTCAAATCACGAAACCAATCTCCTGGTTTATGAATACATGCCTAATGGGAGTTTAGGGGAAGTTCTTCACGGGAAGAAGGGCGGCCATTTGCAGTGGGACACAAGGTACAAAATCGCCATTGAAGCTGCTAAAGGTCTATGCTATTTACATCATGATTGTTCGCCATTGATTGTTCATCGAGATGTGAAATCAAACAACATTCTTCTGGATTCTGATTACGAAGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTTCTTCAGGATTCGGGTACATCAGAGTGTATGTCCGCCATAGCTGGTTCTTACGGATACATAGCTCCAGAATACGCTTATACATTACGAGTGGACGAGAAGAGCGATGTTTATAGCTTTGGAGTAGTACTTTTAGAATTGGTGAGCGGGCGAAAGCCGGTCGGGGAATTCGGGGACGGGGTTGACATAGTTCAATGGGTTAGAAAAATGACGAGCCCCAACAATGAAGGGGTGGTGAAAATCATCGATCCACGGCTGTCGTCGGTGCCGCTGAATGAAGTGAGTCATATGTTCTATGTAGCAATGCTGTGTGTGGAAGAGCAGGCAGTGGAGCGGCCAACAATGAGAGAAGTAGTTCAAATCCTGACAGAGCTGTCGAGGGCACCAAGCTGTAAAGAAGGCGAAGCAACATCGGCAATGTCACCACCGGGAACAACGGTGGCGTTGGATTCACCAAAGAAAACAACACAGCCACCGCCTGATCTTCTGAGCATTTGA 3012 47.18 MKLLLLLFLLLHLHTHLSLSSHLPEFRALLSLKTSLSDDSHSPLSNWDAATHHCTWTGVVCDFRRHVVGLDLSGLNLSGTLSPDLGSLRFLANLSLAANQISGPIPPEISAISPLKYLNLSNNLINGTFPLQLSLLTNLEVLDLYNNNMSGNLPLVVIELPNLRHLHLGGNFFSGVIPPEYGTWQFMEYLAVSGNELQGPIPPEIGNLTRLRELYIGYYNTYDGGLPPEIGNLSELVRLDAANCGLMGEIPRELGKLRKLDTLFLQVNVFSGPLIPELGSLTELKSMDLSNNILVGEIPDSFSQLKNLTLLHLFRNKLHGAIPQFIGELTELEVLQLWENNFTGSIPYNLGKNGKLVVLDISSNKLTGTLPPDMCHGNRLQTLITLGNFLFGPIPESLGRCESLSRIRMGENFLNGSIPKGLFSLPNLSQVELQNNFLTGEFPVTDSVSANLGQISLSNNRLSGSLPPMVGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSHNKFSGQIAPEISQCKLLTFVDLSRNELSGEIPNEITTMRILNYLNLSRNHLIGSVPASISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGPCRNGVDNGTHPPHLKPSLSASVKLLLVIVLLVCSIAFAIAAIIKARSLKRASGSRAWKLTAFQRLDFTVDDILNSLKEDNIIGKGGAGIVYKGFMPSGDHVAVKRLPAMSRGSSHDHGFNAEIQTLGRIKHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSDYEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLRVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTSPNNEGVVKIIDPRLSSVPLNEVSHMFYVAMLCVEEQAVERPTMREVVQILTELSRAPSCKEGEATSAMSPPGTTVALDSPKKTTQPPPDLLSI 1003
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4048232 4051773 - CmoCh16G007960.1 Cmo16g00796 399831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00796 1003 Pfam Leucine rich repeat N-terminal domain 25 62 IPR013210 -
Cmo16g00796 1003 Gene3D Ribonuclease Inhibitor 273 326 IPR032675 -
Cmo16g00796 1003 Gene3D Ribonuclease Inhibitor 178 272 IPR032675 -
Cmo16g00796 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Cmo16g00796 1003 MobiDBLite consensus disorder prediction 977 1003 - -
Cmo16g00796 1003 SUPERFAMILY Protein kinase-like (PK-like) 681 960 IPR011009 -
Cmo16g00796 1003 Pfam Protein tyrosine and serine/threonine kinase 691 960 IPR001245 GO:0004672|GO:0006468
Cmo16g00796 1003 Pfam Leucine Rich Repeat 284 305 IPR001611 GO:0005515
Cmo16g00796 1003 Pfam Leucine Rich Repeat 162 179 IPR001611 GO:0005515
Cmo16g00796 1003 Gene3D Ribonuclease Inhibitor 327 620 IPR032675 -
Cmo16g00796 1003 Gene3D Ribonuclease Inhibitor 24 177 IPR032675 -
Cmo16g00796 1003 MobiDBLite consensus disorder prediction 968 1003 - -
Cmo16g00796 1003 SMART LRR_typ_2 281 305 IPR003591 -
Cmo16g00796 1003 SMART LRR_typ_2 354 377 IPR003591 -
Cmo16g00796 1003 SMART LRR_typ_2 497 521 IPR003591 -
Cmo16g00796 1003 SMART LRR_typ_2 136 160 IPR003591 -
Cmo16g00796 1003 SMART LRR_typ_2 569 592 IPR003591 -
Cmo16g00796 1003 SMART LRR_typ_2 329 353 IPR003591 -
Cmo16g00796 1003 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 3 994 - -
Cmo16g00796 1003 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 3 994 - -
Cmo16g00796 1003 SMART serkin_6 689 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00796 1003 Gene3D Phosphorylase Kinase; domain 1 656 766 - -
Cmo16g00796 1003 ProSiteProfiles Protein kinase domain profile. 689 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00796 1003 SUPERFAMILY L domain-like 298 615 - -
Cmo16g00796 1003 SUPERFAMILY RNI-like 69 391 - -
Cmo16g00796 1003 Gene3D Transferase(Phosphotransferase) domain 1 767 978 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00092 Cmo-Chr3:1318734 Cmo16g00796 Cmo-Chr16:4048232 5.51E-148 dispersed
Cmo03g00910 Cmo-Chr3:6986445 Cmo16g00796 Cmo-Chr16:4048232 0 dispersed
Cmo07g00617 Cmo-Chr7:2778362 Cmo16g00796 Cmo-Chr16:4048232 0 dispersed
Cmo07g01342 Cmo-Chr7:7608369 Cmo16g00796 Cmo-Chr16:4048232 6.60E-143 dispersed
Cmo09g00093 Cmo-Chr9:446395 Cmo16g00796 Cmo-Chr16:4048232 0 dispersed
Cmo16g00796 Cmo-Chr16:4048232 Cmo16g00839 Cmo-Chr16:4422624 0 dispersed
Cmo16g00796 Cmo-Chr16:4048232 Cmo07g00616 Cmo-Chr7:2771862 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74968 PF07714 PK_Tyr_Ser-Thr 3.30E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00796 - - cic:CICLE_v10024796mg 1600.88