Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00800 ATGGCTGGGGGAGGAATGATCCGGCAGTTGCTGAGGAAATTTCCATCTCAATCTTCAACCCCTCCATTGACCTCATCCCTTATTTCAAAGAATGAGGAAGCTGGCTTTGCTGGGATGAACTCCTTTAGAAGGCTTGCTCTCCTTGGAGCAGGCATTTCTGGGTTTTTTAGTTTCGCAACTATAGCATCTGCTGATGAGGCAGAACATGGCTTGGAGTGCCCAAACTATCCCTGGCCTCACCAGGGCATCTTGAGTTCATATGATCATGCTTCATGGGCTCATCCATGCCTGTCCTTGGTCATTGAACTATTTAGAAACTTTACATTACTGGACACCCCAGCCTTAGACTCTGCATATTTGATCACCATCATCATCTTCTTCCTTATAGTGAAATGGATTCGTCGTGGCCATCAGGTTTACCAACAAGTTTGTGCATCCTGTCATTCCATGTCTTTAATATCATACCGTGATTTGGTTGGTGTTGCATATACTGAAGAGGAGACAAAAGCAATGGCTGCTGAAATTGAGGTAGTTGATGGGCCCAATGATGAAGGTGAGATGTTCACTCGTCCAGGTAAACTCAGTGACCGGTTTCCTGAACCATATGCAAATGAACAAGCTGCTAGATTCGCTAATGGTGGAGCATATCCTCCAGATCTGAGCCTTATCACAAAAGCTCGTCATAATGGTCAGAATTATGTATTTGCCCTTCTTACTGGTTATCGTGATCCACCTGCTGGCGTTTCGATCCGAGAGGGTCTGCACTATAACCCTTATTTCCCTGGGGGAGCAATTGCGATGCCTAAGATGCTTAATGATGGAGCTGTCGAGTACGAAGATGGTACCCCAGCGACAGAAGCACAGATGGGTAAAGATGTTGTCTCGTTCTTGTCATGGGCTGCTGAACCAGAAATGGAAGAAAGGAAACTGATGGGATTCAAATGGATCTTCGTGCTCTCTCTGGCTCTACTTCAGGCCGCATATTATCGCCGATTGAAGTGGTCAGTTTTGAAGTCCCGCAAGCTGGTTCTTGATGTGGTCAATTAG 1047 45.94 MAGGGMIRQLLRKFPSQSSTPPLTSSLISKNEEAGFAGMNSFRRLALLGAGISGFFSFATIASADEAEHGLECPNYPWPHQGILSSYDHASWAHPCLSLVIELFRNFTLLDTPALDSAYLITIIIFFLIVKWIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPEPYANEQAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLKWSVLKSRKLVLDVVN 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4077870 4083666 - CmoCh16G008000.1 Cmo16g00800 399835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00800 348 SUPERFAMILY Cytochrome c 133 302 IPR036909 GO:0009055|GO:0020037
Cmo16g00800 348 Pfam Cytochrome C1 family 133 335 IPR002326 GO:0009055|GO:0020037
Cmo16g00800 348 PANTHER CYTOCHROME C1 25 92 IPR002326 GO:0009055|GO:0020037
Cmo16g00800 348 PANTHER CYTOCHROME C1 133 348 IPR002326 GO:0009055|GO:0020037
Cmo16g00800 348 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 25 92 - -
Cmo16g00800 348 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 133 348 - -
Cmo16g00800 348 Gene3D - 130 303 IPR036909 GO:0009055|GO:0020037
Cmo16g00800 348 Gene3D - 304 347 - -
Cmo16g00800 348 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 303 347 IPR021157 -
Cmo16g00800 348 PRINTS Cytochrome C1 signature 284 303 IPR002326 GO:0009055|GO:0020037
Cmo16g00800 348 PRINTS Cytochrome C1 signature 303 318 IPR002326 GO:0009055|GO:0020037
Cmo16g00800 348 PRINTS Cytochrome C1 signature 264 283 IPR002326 GO:0009055|GO:0020037
Cmo16g00800 348 PRINTS Cytochrome C1 signature 76 95 IPR002326 GO:0009055|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00871 Cmo-Chr4:4357489 Cmo16g00800 Cmo-Chr16:4077870 4.43E-12 transposed
Cmo16g00800 Cmo-Chr16:4077870 Cmo04g00920 Cmo-Chr4:4624245 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00800 K00413 - csv:101215010 584.719