Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g00804 | ATGGCGCCGCAGCCGCCGACGCCGCCGCCCACCAACTGGCTCTCCTTCTCTCTTTCCCCTATTGAAATGCTTCGCTCTACTGACTCTCCGTTTCTTCCTTATGAGCCACCCTCCACTGCCTCTCCGCACTATCTTTTGGACAGTTTTTACTCCAATAATGGATGGAGTGGCAGTGCTAATTCTCATCATAATCATGAACCTAAGCTTGAGGATTTCCTCGGTGATTCCTCGCCGATGATGCGATATTCCGACAGCCAAACAGAGACACAAGATTCGTCTTTGACTCATATTTACGACCATGCCTATTTTGGGGACCAACAGGATTTTAAAACCATTGCGGCGTTTCAAGCTTTTTCTGGTAACTCTGGCTCTGAAGTTGATGACTCTGTTTCCATTACCAGAACCCAGATCGCCGCTGCTGAGATCCCCACTGGTGCTCTGTCTCTTGCTGTCGTGCAGAGCTCCGACACGGCGTCGGCTGTTGTCGCTGTCGATTCTGATTCCTCCAAGAAAATCGCTGATACGTTTGGCCAACGAACTTCGATTTATAGAGGAGTCACTAGACATAGATGGACGGGGAGATATGAAGCGCATCTATGGGACAATAGCTGTAGAAGAGAGGGTCAAGCTAGGAAAGGACGACAAGGTGGATATGATAAGGAGGACAAAGCAGCTAGGGCTTATGATTTGGCAGCTTTGAAGTACTGGGGTCCCACTGCTACCACCAATTTTCCTGTTTCGAATTACGCCAAAGAATTGGACGAGATGAAACATGTCACGAAGCAAGAGTTTATTGCTTCTTTGCGAAGAAAGAGCAGTGGTTTCTCGAGGGGTGCGTCGATTTATAGAGGTGTAACTAGGCATCATCAGCAGGGTCGATGGCAGGCGAGAATTGGTCGTGTTGCTGGGAACAAGGATCTATATCTCGGGACGTTTGCTACGGAAGAGGAAGCAGCTGAGGCTTACGACATAGCAGCGATCAAGTTCAGAGGTTTGAATGCTGTGACAAACTTTGAGATGAGTCGTTACGACGTGGAAGCTATTGCAAAGAGCGCGTTGCCGATCGGGGGAGCAGCGAAGAGGCTGAAGCTTTGCCTGGAAGCCGAGCAGAAACCGATTTTGAATCATGATCAAGCAATCCAGTGCAGCAATGGAACCAACAATATGAACTTAGGCACTGCCATCCCGTCCATCCCGTGCGGAATTCCATACGATACCGCAGCCATGCTGTATCACCATAATTACTATCATCTTCAGCCTAACGCGATCGGTTCCTCGGAGTCGACCAGCCCAGCCATTGCAGCTCCGGTGACTTTGGGACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCACCAGTCGTATTAG | 1365 | 49.52 | MAPQPPTPPPTNWLSFSLSPIEMLRSTDSPFLPYEPPSTASPHYLLDSFYSNNGWSGSANSHHNHEPKLEDFLGDSSPMMRYSDSQTETQDSSLTHIYDHAYFGDQQDFKTIAAFQAFSGNSGSEVDDSVSITRTQIAAAEIPTGALSLAVVQSSDTASAVVAVDSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEDKAARAYDLAALKYWGPTATTNFPVSNYAKELDEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVEAIAKSALPIGGAAKRLKLCLEAEQKPILNHDQAIQCSNGTNNMNLGTAIPSIPCGIPYDTAAMLYHHNYYHLQPNAIGSSESTSPAIAAPVTLGPQAAEFFVWPHQSY | 454 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 4136796 | 4140561 | + | CmoCh16G008040.1 | Cmo16g00804 | 399839 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g00804 | 454 | ProSiteProfiles | AP2/ERF domain profile. | 281 | 339 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g00804 | 454 | SMART | rav1_2 | 281 | 345 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g00804 | 454 | SMART | rav1_2 | 182 | 251 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g00804 | 454 | CDD | AP2 | 181 | 247 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g00804 | 454 | Gene3D | AP2/ERF domain | 182 | 247 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo16g00804 | 454 | Gene3D | AP2/ERF domain | 281 | 341 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo16g00804 | 454 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 50 | 432 | - | - | |
Cmo16g00804 | 454 | SUPERFAMILY | DNA-binding domain | 280 | 341 | IPR016177 | GO:0003677 | |
Cmo16g00804 | 454 | CDD | AP2 | 280 | 341 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g00804 | 454 | Pfam | AP2 domain | 281 | 331 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g00804 | 454 | Pfam | AP2 domain | 182 | 237 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g00804 | 454 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 | 50 | 432 | - | - | |
Cmo16g00804 | 454 | SUPERFAMILY | DNA-binding domain | 181 | 247 | IPR016177 | GO:0003677 | |
Cmo16g00804 | 454 | PRINTS | Ethylene responsive element binding protein signature | 321 | 341 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g00804 | 454 | PRINTS | Ethylene responsive element binding protein signature | 183 | 194 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo16g00804 | 454 | ProSiteProfiles | AP2/ERF domain profile. | 182 | 245 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00922 | Cmo-Chr4:4635302 | Cmo16g00804 | Cmo-Chr16:4136796 | 0 | dispersed | |
Cmo16g00804 | Cmo-Chr16:4136796 | Cmo11g00384 | Cmo-Chr11:1921034 | 9.37E-09 | dispersed | |
Cmo16g00804 | Cmo-Chr16:4136796 | Cmo20g00077 | Cmo-Chr20:403519 | 3.79E-122 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11305 | PF00847 | AP2 | 1.00E-08 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g00804 | K09285 | - | csv:101217714 | 711.064 |