Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00804 ATGGCGCCGCAGCCGCCGACGCCGCCGCCCACCAACTGGCTCTCCTTCTCTCTTTCCCCTATTGAAATGCTTCGCTCTACTGACTCTCCGTTTCTTCCTTATGAGCCACCCTCCACTGCCTCTCCGCACTATCTTTTGGACAGTTTTTACTCCAATAATGGATGGAGTGGCAGTGCTAATTCTCATCATAATCATGAACCTAAGCTTGAGGATTTCCTCGGTGATTCCTCGCCGATGATGCGATATTCCGACAGCCAAACAGAGACACAAGATTCGTCTTTGACTCATATTTACGACCATGCCTATTTTGGGGACCAACAGGATTTTAAAACCATTGCGGCGTTTCAAGCTTTTTCTGGTAACTCTGGCTCTGAAGTTGATGACTCTGTTTCCATTACCAGAACCCAGATCGCCGCTGCTGAGATCCCCACTGGTGCTCTGTCTCTTGCTGTCGTGCAGAGCTCCGACACGGCGTCGGCTGTTGTCGCTGTCGATTCTGATTCCTCCAAGAAAATCGCTGATACGTTTGGCCAACGAACTTCGATTTATAGAGGAGTCACTAGACATAGATGGACGGGGAGATATGAAGCGCATCTATGGGACAATAGCTGTAGAAGAGAGGGTCAAGCTAGGAAAGGACGACAAGGTGGATATGATAAGGAGGACAAAGCAGCTAGGGCTTATGATTTGGCAGCTTTGAAGTACTGGGGTCCCACTGCTACCACCAATTTTCCTGTTTCGAATTACGCCAAAGAATTGGACGAGATGAAACATGTCACGAAGCAAGAGTTTATTGCTTCTTTGCGAAGAAAGAGCAGTGGTTTCTCGAGGGGTGCGTCGATTTATAGAGGTGTAACTAGGCATCATCAGCAGGGTCGATGGCAGGCGAGAATTGGTCGTGTTGCTGGGAACAAGGATCTATATCTCGGGACGTTTGCTACGGAAGAGGAAGCAGCTGAGGCTTACGACATAGCAGCGATCAAGTTCAGAGGTTTGAATGCTGTGACAAACTTTGAGATGAGTCGTTACGACGTGGAAGCTATTGCAAAGAGCGCGTTGCCGATCGGGGGAGCAGCGAAGAGGCTGAAGCTTTGCCTGGAAGCCGAGCAGAAACCGATTTTGAATCATGATCAAGCAATCCAGTGCAGCAATGGAACCAACAATATGAACTTAGGCACTGCCATCCCGTCCATCCCGTGCGGAATTCCATACGATACCGCAGCCATGCTGTATCACCATAATTACTATCATCTTCAGCCTAACGCGATCGGTTCCTCGGAGTCGACCAGCCCAGCCATTGCAGCTCCGGTGACTTTGGGACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCACCAGTCGTATTAG 1365 49.52 MAPQPPTPPPTNWLSFSLSPIEMLRSTDSPFLPYEPPSTASPHYLLDSFYSNNGWSGSANSHHNHEPKLEDFLGDSSPMMRYSDSQTETQDSSLTHIYDHAYFGDQQDFKTIAAFQAFSGNSGSEVDDSVSITRTQIAAAEIPTGALSLAVVQSSDTASAVVAVDSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEDKAARAYDLAALKYWGPTATTNFPVSNYAKELDEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVEAIAKSALPIGGAAKRLKLCLEAEQKPILNHDQAIQCSNGTNNMNLGTAIPSIPCGIPYDTAAMLYHHNYYHLQPNAIGSSESTSPAIAAPVTLGPQAAEFFVWPHQSY 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4136796 4140561 + CmoCh16G008040.1 Cmo16g00804 399839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00804 454 ProSiteProfiles AP2/ERF domain profile. 281 339 IPR001471 GO:0003700|GO:0006355
Cmo16g00804 454 SMART rav1_2 281 345 IPR001471 GO:0003700|GO:0006355
Cmo16g00804 454 SMART rav1_2 182 251 IPR001471 GO:0003700|GO:0006355
Cmo16g00804 454 CDD AP2 181 247 IPR001471 GO:0003700|GO:0006355
Cmo16g00804 454 Gene3D AP2/ERF domain 182 247 IPR036955 GO:0003700|GO:0006355
Cmo16g00804 454 Gene3D AP2/ERF domain 281 341 IPR036955 GO:0003700|GO:0006355
Cmo16g00804 454 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 50 432 - -
Cmo16g00804 454 SUPERFAMILY DNA-binding domain 280 341 IPR016177 GO:0003677
Cmo16g00804 454 CDD AP2 280 341 IPR001471 GO:0003700|GO:0006355
Cmo16g00804 454 Pfam AP2 domain 281 331 IPR001471 GO:0003700|GO:0006355
Cmo16g00804 454 Pfam AP2 domain 182 237 IPR001471 GO:0003700|GO:0006355
Cmo16g00804 454 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 50 432 - -
Cmo16g00804 454 SUPERFAMILY DNA-binding domain 181 247 IPR016177 GO:0003677
Cmo16g00804 454 PRINTS Ethylene responsive element binding protein signature 321 341 IPR001471 GO:0003700|GO:0006355
Cmo16g00804 454 PRINTS Ethylene responsive element binding protein signature 183 194 IPR001471 GO:0003700|GO:0006355
Cmo16g00804 454 ProSiteProfiles AP2/ERF domain profile. 182 245 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00922 Cmo-Chr4:4635302 Cmo16g00804 Cmo-Chr16:4136796 0 dispersed
Cmo16g00804 Cmo-Chr16:4136796 Cmo11g00384 Cmo-Chr11:1921034 9.37E-09 dispersed
Cmo16g00804 Cmo-Chr16:4136796 Cmo20g00077 Cmo-Chr20:403519 3.79E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11305 PF00847 AP2 1.00E-08 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00804 K09285 - csv:101217714 711.064