Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00807 ATGGTTCTTGTTGGTTCTTTGCAACTGTCCTATCATCTGGGACCGTGGAAAAACCATTTGCTTGAAGAAAATCTTAAGTTTACCTCTCATAGCAATAACATACGGTTACAGAATGTAGCCAGTCCATCGTCTCTTTTATTTCAGCAGAAGAACACTTGGAGTAGTCATTTATTTAGCTTGAAATACCCACCTAGTTACGTTGTGCCTTCTAGATACAATGCATTCAGGTGCCATTCGTCATTGATGACAAACCAACCACTGGATCCCTCTGGGATGAAGGCTGCTATAGTGGCGTTGACAAGGTTTTGTAATGTATTAGGTGGTTGTCCTCCTCCAGTTGTTAAGATGGTTCCTGCAGTTAGTATTATGATATTTGCTGTATGGGGTCTTGGACCATTTTTGCGTTATACAAGAAGCCTACTCCATAGTGATAGTAACTGGAAGAAAAGCCAGACATATAAAGTCATGACCTTGTATCTTCAACCATTATTGCTATGGACTGGAGCAACACTTATTTGCAGAGCTTTAGATCCAGTAGTTTTACCTACAGAGTCTAGCCAAGTTGTGAAGCAACGGGTGTTGAATTTTGTTAGGTCATTGTCCACTGTACTGGCCTTTGCGTATTGCTTATCTAGCATGATTCAACAAGCACAGAAATTCTTCTCAGAGACTAGTGAATCCAGTGATGCGAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTGTACTCTGCAGTATGGGTTGCTGCTCTCTCATTGTTCATGGAGCTGTTAGGCTTTTCAACCCAAAAATGGCTTACAGCTGGAGGTCTTGGGACTGTGTTGCTGACATTAGCTGGCCGCGAGATTTTCACCAACTTTCTCTCAAGTGTAATGATTCATGCAACCCGTCCTTTCGTTGTAAATGAGTGGATCCAAACGAGGATCGAGGGCTATGAAGTTTCTGGAACTGTTGAGCATGTAGGGTGGTGGTCGCCAACGATCATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCATAAATTTACCATGAATGTCGTGAGAAATCTCAGCCAAAAAACTCACTGGCGGATTAAAACCCACCTAGCCATCAGCCATTTGGATGTCAGTAAAATCAATAATATTGTCGCAGACATGCGGAAAGTCTTGGCAAAGAACCCTCAAGTTGAACAACAGAGATTGCATAGAAGAGTTTTTTTGGAAAACGTGAATCCTGAAAATCAGGCCCTTTTGATTTTGATATCTTGCTTTGTCAAGACTTCACATTTTGAAGAATACCTTTGTGTGAAGGAAGCTATATTTTTGGATCTTCTTAGAGTCATTAGACATCACCGAGCTCGACTTGCGACACCAATCCGCACAGTGCAGAAGATGCATAGTGATTCAGACTTGGAAAGCGTTCCATTTTCTGATTCAATATTTGGTCATGGTGGTGCGACTTTGAATCGTCGCATGCTGATGATTGAACCCCCCTACAAAGTTTATGGAGATGATCGAAAGCAAAGCCATAGTAGGACATCACGCACAACTGGAGAACAAAACGGTAAGCCCATTGCACGGTCATCAGGTGACAACAAGGCAGCTAAAGAGACAACACCATCGGAAAGAAAGACGGAAGTAAAGCCTGGAGAAGGACGAGACTCCGATGCAAAAATACATTCCAAAGTTCCGATGTCGACCTCTGAAGATAAACCAAGCAGTGAATCGAAACATAAATCATCATCAAGGTCTGTGTCGAGTACGAATGGTATCGCTGATATGCCAACTTCTGATGCCAAAACAACTCCATCAGATGCTGATAATTCAATGCAAGATTCTGGCTCCTCCAAGAAATCCAAAAATAGCTCAGGGAGTAACAACAAGCAGAACTACAAGCCTATCCATTCTTCTGTTTCCTTTCAGGAAGATGTCAAGAAACCAGAAGGAACTACTTCATCAGCTTCACAGCCAAGGATAGAAGGTGATCAGACGACGAATCCATCAACAACAAAGCCCGGCGTAGAAGAGAATATAATCCTCGGCGTTGCTTTGGATGGCTCTAAGAGAACACTCCCTATCGAGGACGACACGCCATCTTCCCCTCAAACGACGTTGGGAGCAAAAGATTTGGCTGCTGCATCCCTGAATGGGAACGGGGCGACTGGAGCAACAACTCCCGACAAGGAAACGAAACGGCTGTCTCCTCCTACCACATCTTCTATTGAATAA 2214 43.22 MVLVGSLQLSYHLGPWKNHLLEENLKFTSHSNNIRLQNVASPSSLLFQQKNTWSSHLFSLKYPPSYVVPSRYNAFRCHSSLMTNQPLDPSGMKAAIVALTRFCNVLGGCPPPVVKMVPAVSIMIFAVWGLGPFLRYTRSLLHSDSNWKKSQTYKVMTLYLQPLLLWTGATLICRALDPVVLPTESSQVVKQRVLNFVRSLSTVLAFAYCLSSMIQQAQKFFSETSESSDARNMGFQFAWKAVYSAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTRIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTMNVVRNLSQKTHWRIKTHLAISHLDVSKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQALLILISCFVKTSHFEEYLCVKEAIFLDLLRVIRHHRARLATPIRTVQKMHSDSDLESVPFSDSIFGHGGATLNRRMLMIEPPYKVYGDDRKQSHSRTSRTTGEQNGKPIARSSGDNKAAKETTPSERKTEVKPGEGRDSDAKIHSKVPMSTSEDKPSSESKHKSSSRSVSSTNGIADMPTSDAKTTPSDADNSMQDSGSSKKSKNSSGSNNKQNYKPIHSSVSFQEDVKKPEGTTSSASQPRIEGDQTTNPSTTKPGVEENIILGVALDGSKRTLPIEDDTPSSPQTTLGAKDLAAASLNGNGATGATTPDKETKRLSPPTTSSIE 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4154484 4162845 + CmoCh16G008070.1 Cmo16g00807 399842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00807 737 MobiDBLite consensus disorder prediction 712 737 - -
Cmo16g00807 737 MobiDBLite consensus disorder prediction 496 737 - -
Cmo16g00807 737 MobiDBLite consensus disorder prediction 574 668 - -
Cmo16g00807 737 Pfam Mechanosensitive ion channel 241 447 IPR006685 GO:0016020|GO:0055085
Cmo16g00807 737 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 1 726 - -
Cmo16g00807 737 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Cmo16g00807 737 Gene3D - 298 351 IPR023408 -
Cmo16g00807 737 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 726 IPR045042 -
Cmo16g00807 737 MobiDBLite consensus disorder prediction 509 530 - -
Cmo16g00807 737 MobiDBLite consensus disorder prediction 688 704 - -
Cmo16g00807 737 Gene3D - 193 297 - -
Cmo16g00807 737 MobiDBLite consensus disorder prediction 531 573 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00153 Cmo-Chr12:995821 Cmo16g00807 Cmo-Chr16:4154484 0 dispersed
Cmo12g00881 Cmo-Chr12:8017112 Cmo16g00807 Cmo-Chr16:4154484 1.28E-09 dispersed
Cmo16g00807 Cmo-Chr16:4154484 Cmo05g00572 Cmo-Chr5:2804121 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00807 K22047 - csv:101217250 1137.48