Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00814 ATGCAGGAGAAAGACTGGTTATCACTGGTTGCTGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGTTGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGAGTGGAAATGGTAAGCAGTCAAAAGAACAGTCTGCCACTCATAACAATGGCAGCAAAAGCAAGTCGAGTGGGAAGACGCAGTCTCGGCAATTGGAGTCTCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAAGACGAAGATAGCGGGGAAGATGAGGAGGAAGAAGAAGACGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAACGACGAATTCTGGATTTGTTGCGATGTGTGCGAAAGATGGTTCCATGGAAAATGCGTGAAGATTACTCCCGCAAAGGCGGAGCATATCAAGCAGTACAAGTGTCCAAGTTGCAGTAACAAGAGGGCAAGGGTTTGA 519 47.01 MQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQLINDLPSVFEVVSGNGKQSKEQSATHNNGSKSKSSGKTQSRQLESHSKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4208228 4210835 + CmoCh16G008140.1 Cmo16g00814 399849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00814 172 SMART PHD_3 118 166 IPR001965 -
Cmo16g00814 172 PANTHER CPG BINDING PROTEIN 1 172 IPR045104 GO:0006355|GO:0042393
Cmo16g00814 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 167 IPR013083 -
Cmo16g00814 172 Pfam Alfin 1 54 IPR021998 GO:0006355|GO:0042393
Cmo16g00814 172 MobiDBLite consensus disorder prediction 55 118 - -
Cmo16g00814 172 Pfam PHD-finger 119 168 IPR019787 -
Cmo16g00814 172 MobiDBLite consensus disorder prediction 55 88 - -
Cmo16g00814 172 ProSitePatterns Zinc finger PHD-type signature. 119 165 IPR019786 -
Cmo16g00814 172 MobiDBLite consensus disorder prediction 100 117 - -
Cmo16g00814 172 ProSiteProfiles Zinc finger PHD-type profile. 116 168 IPR019787 -
Cmo16g00814 172 CDD PHD_AL_plant 119 168 IPR044104 -
Cmo16g00814 172 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR-RELATED 1 172 - -
Cmo16g00814 172 SUPERFAMILY FYVE/PHD zinc finger 107 169 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00814 Cmo-Chr16:4208228 Cmo17g00678 Cmo-Chr17:6938430 2.13E-77 dispersed
Cmo16g00814 Cmo-Chr16:4208228 Cmo04g00939 Cmo-Chr4:4752502 1.40E-122 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11307 PF12165 Alfin 1.30E-21 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00814 - - cpep:111798014 326.635