Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00824 ATGGATGAGAGATGCGAGAACGGCCGCGAAAGTGAGGGGTCTGAGAGCTTGGCGGAATCGCCGTTTATAGAGGATAGAGATTCTGTATCGCTCACGCTAGGGGAGCCGCTCTTGCGTGCCAGTACTGCGAGGATCAGTACTACCTCGCAACTTGCCATTGTTGGTTCTAATATCTGTCCTATTGAGAGCTTGGACTACGAGATTATTGAGAATGATCTTTTCAAGCAGGATTGGAGGTCAAGAAGAAAGGTCGAGATATTTCAGTATGTCATCCTCAAATGGACGCTGTGCCTTTTCATTGGTCTAATTACCGGGGTCGTTGGCTTCTTCAACAACATAGCTGTTGAGAATATTGCTGGTCACAAACTTCTGCTGACGAATAATCTGATGCTTAAGGAAAAGTACTATCAGGCCTTTGCAGTATACGTTGGATCCAATATCGTCTTAGCTGCTGCTGCTGCAACCCTCTGTGCCTATATTGCTCCGGCTGCTGCAGGTTCGGGTATTCCTGAGGTGAAAGCATACCTTAACGGTATTGATGCTTATTCTATATTGGCTCCAAGTACCTTATTTGTGAAGATTTTTGGTTCTATATTTGCTGTTGCCGGTGGATTTGTTGTGGGTAAGGAAGGACCCATGGTTCATACTGGTGCATGCATTGCCTCATTACTGGGACAGGGAGGCTCTCGCAAATACCGCTTGACTTGGAAGTGGCTCAGATACTTCAAAAATGATAGGGACAGGCGGGATTTGATAACTTGTGGTGCAGGAGCTGGTGTAGCAGCTGCCTTTCGGGCTCCAGTTGGTGGCGTTCTCTTTGCACTTGAAGAAGCAGCTTCATGGTGGAGGAGTGCTCTTCTCTGGAGGACCTTTTTCACTACTGCTGTAGTAGCTGTTGTCTTGAGGGGTTTCATGGAGTTTTGTCGAGGGGGAAAATGTGGGTTATTTGGTGAAGGAGGTCTCATCATGTTCGAAATCCACACCGAAAACTCCGCTTATGGCACCCCAGATCTTATTGCAATTATTTTACTTGGAGTCATTGGAGGTGTGCTTGGAAGCCTTTACAACTACCTCGTCGATAAGGTTCTTCGAACCTACAGCATCATAAATGAGAGAGGTCCCGGATCGAAGCTCATCCTTGTTGTTGGCGTTTCCATATTGACAACCTGTGTCTCCTTTGGTCTTCCTTGGTTCTCACAATGTTTACCTTGCCCATCTGACTTGGACGATCAATGCCCTACCGTTGGTCGCTCGGGAAACTACAAGAACTTCCAATGCCCACCTGGCCATTATAATGATCTTGCTTCTTTATTTTTCAATACCAATGATGATGCCATCCGGAGCCTGCTCACATCTGCTAGTGACAAGCATTTTCAGTTGTCCTCACTTTTTATATTCTTTGGTGCTATCTATTGTCTAGGCATTATTACTTATGGCATTGCCGTGCCTTCAGGGCTCTTTATTCCTGTGATTCTGGCAGGGGCCTCTTATGGTCGCATTATAGGGAGATTATTTGGTTCAGTTGCTACTCTTGATGTCAGCCTCTATGCCCTTCTCGGTGCTGCATCCTTCCTTGGTGGCACTATGAGAATGACTGTTTCTCTTTGTGTCATACTCCTGGAGCTTACCAATAACCTTTTGATGCTCCCATTACTAATGTTGGTTCTTCTGATTTCAAAGTCAGTGGCAGATATTTTTAATAAAGGTGTCTATGATCAGATTGTGAAGATGAAGGGACTACCTTTTATGGAAGCCCATGCAGAACCATTTATGAGGCAATTGGTCGCTGGTGGTGTGGCTTCTGGTCCTTTAATTACGTTTTCTGGGATCGAAAAGGTCGATAACATTATCCACGCTTTGAAAACGACTAACCACAATGGGTTTCCTGTAATTGATGAACTGCCTTCCTCAGATAGTTCAGAGCTTTGTGGGCTTGTTCTGAGGTCTCATTTGCTTGTTTTGCTTAAAGAAAAAAAGTTCACTAAGAAAAAGGTGTCGATTAGATCAGAAATTTTGAGGCACTTCAAAGCACATGATTTTGCAAAAGCAGGTTCTGGCAAAGGGGTGAAACTTGAAGATTTGAACTTCAATGAGGAGGAGATGGAAATGTTTGTTGATCTTCATCCCGTTACAAACACATCGCCCTACACAGTGGTTGAATCAATGTCCCTAGCTAAAGCGGCTATTCTCTTTCACGCACTCGGCTTGAGGCACTTGTTGGTCGTTCCGAAGACACCTGGGGTAAGACACTTCCTTACATTCTTATCAATCTGCAACACTTTGCCTATATTTATTGTCTTGAATGTCCTAAGATGA 2316 44.65 MDERCENGRESEGSESLAESPFIEDRDSVSLTLGEPLLRASTARISTTSQLAIVGSNICPIESLDYEIIENDLFKQDWRSRRKVEIFQYVILKWTLCLFIGLITGVVGFFNNIAVENIAGHKLLLTNNLMLKEKYYQAFAVYVGSNIVLAAAAATLCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAGAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFMEFCRGGKCGLFGEGGLIMFEIHTENSAYGTPDLIAIILLGVIGGVLGSLYNYLVDKVLRTYSIINERGPGSKLILVVGVSILTTCVSFGLPWFSQCLPCPSDLDDQCPTVGRSGNYKNFQCPPGHYNDLASLFFNTNDDAIRSLLTSASDKHFQLSSLFIFFGAIYCLGIITYGIAVPSGLFIPVILAGASYGRIIGRLFGSVATLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKSVADIFNKGVYDQIVKMKGLPFMEAHAEPFMRQLVAGGVASGPLITFSGIEKVDNIIHALKTTNHNGFPVIDELPSSDSSELCGLVLRSHLLVLLKEKKFTKKKVSIRSEILRHFKAHDFAKAGSGKGVKLEDLNFNEEEMEMFVDLHPVTNTSPYTVVESMSLAKAAILFHALGLRHLLVVPKTPGVRHFLTFLSICNTLPIFIVLNVLR 771
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4330802 4335486 - CmoCh16G008240.1 Cmo16g00824 399859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00824 771 CDD CBS_pair_voltage-gated_CLC_euk_bac 586 744 - -
Cmo16g00824 771 Gene3D Clc chloride channel 85 584 - -
Cmo16g00824 771 PRINTS Plant CLC chloride channel signature 67 75 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo16g00824 771 PRINTS Plant CLC chloride channel signature 292 302 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo16g00824 771 PRINTS Plant CLC chloride channel signature 310 317 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo16g00824 771 PRINTS Plant CLC chloride channel signature 278 286 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo16g00824 771 PRINTS Plant CLC chloride channel signature 434 450 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo16g00824 771 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 32 750 - -
Cmo16g00824 771 Pfam Voltage gated chloride channel 150 564 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo16g00824 771 SUPERFAMILY Clc chloride channel 71 585 IPR014743 -
Cmo16g00824 771 MobiDBLite consensus disorder prediction 1 21 - -
Cmo16g00824 771 Gene3D - 609 745 IPR046342 -
Cmo16g00824 771 SUPERFAMILY CBS-domain pair 587 744 IPR046342 -
Cmo16g00824 771 CDD ClC_6_like 62 583 - -
Cmo16g00824 771 PRINTS Chloride channel signature 532 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo16g00824 771 PRINTS Chloride channel signature 257 276 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo16g00824 771 PRINTS Chloride channel signature 570 584 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo16g00824 771 PRINTS Chloride channel signature 514 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo16g00824 771 PRINTS Chloride channel signature 193 212 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo16g00824 771 PRINTS Chloride channel signature 482 502 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo16g00824 771 PRINTS Chloride channel signature 162 179 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo16g00824 771 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 32 750 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00948 Cmo16g00824 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01212 Cmo-Chr12:10836397 Cmo16g00824 Cmo-Chr16:4330802 0 dispersed
Cmo15g00081 Cmo-Chr15:411910 Cmo16g00824 Cmo-Chr16:4330802 0 dispersed
Cmo16g00824 Cmo-Chr16:4330802 Cmo17g00235 Cmo-Chr17:1386457 0 dispersed
Cmo16g00824 Cmo-Chr16:4330802 Cmo04g00948 Cmo-Chr4:4837882 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00824 K05016 - csv:101209987 1264.21