Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00830 ATGGCTCTGGTCCTGCATTCTTGGAAGGCTAACAAAAATGCTTACAAGGCTTTTATAGCTGCTGAATACAATGGTGTCAAAATTGACCTTTCTCCAGATTTTGTCATGGGCGTAACCAATAAAAGTCCTGAATATCTGAAAATGAATCCTATTGGGAAGGTTCCTGTGTTGGAAACACCCGACGGTGCTATCTTTGAGAGCAATGCTATAGCTCGCTATGTTGCTCGTTTGAAGGACAGCAGTTTATTTGGCTCTTCCTCAATTGACTACGGACATGTTGAACAATGGATCGATTTCTCCACAACGGAAATAGATGCTCATATTTCAACAATTTTGAGGCCTAGATTTGGATATGGTGTTTACCATCCTGCTGTAGAAGAAGCTGCAAACGCTGCCCTAAAACGATCTTTTGCTGCTTTGAACTCTTACCTTGCTTCAAACACATTCCTTGTTGGTCATTCTGTGACACTGGCTGATATCATTTTGACATGCAATCTCTATTTGGGATTTACGTATATATTGACTAAAAGCTTTACTTCCGAGTTCCCTCACGTCGAGAGGTACTTCTGGACGTTGGTCAATCAACCAAATTTCCAAAAGATAATTGGTGAGGTAAAGCAGACTGATGCCATTCCACCAGTGAAAACACCTGAAGAGGCTGCAGCAGCTGCCAAACCAAAGCCTGAGCCCAAGAAACAAGAAGAGAAGCCCAAAGCAGCACCTGCTGCAGAAGAGGAGGCACCAAAGCCGAAGGCCAAAAATCCTCTCGACCTGCTTCCTCCCAGTAAGATGATTTTGGACGAGTGGAAACGTCTCTACTCGAACACTAAAACCAACTTCCGTGAGGTTGCAATCAAAGGATTCTGGGACATGTATGACCCTGAAGGATACTCCCTTTGGTTCTGTGATTACAAATACAACGACGAGAACACAGTTTCATTCGTGACTTTGAACAAAGTCAGCGGATTTCTTCAGAGAATGGATCTTGCTCGCAAGTATGCCTTCGGAAAGATGCTCGTGATCGGATCAGAGGCTCCATTCAAGGTGAAGGGGCTATGGCTTTTCCGTGGACAAGAAATCCCGCAATTTGTGATCGATGAATGCTATGATATGGAACTATACGAGTGGAAGAAGGTGGATATCTCGGACGAAGCCCAGAAGGAGAGGGTGAACCAAATGATTGAAGACCAGGAACCATTCGAGGGTGAAGCTCTTTTGGATGCTAAATGCTTCAACTTTCCCTTCAACTTCTTCCATTTCTCTACTGCCAGCGATCGAGCGTTTCAATTTGTTGCGGAGGTTCTAGATACGGATAGTCAGACAATCGATATGAGCAGAAATTTGAGTCGCAGATCGTCTGATTTGGTTGCGCTTTCCGCTTCGCTTTCCCTACTTTTCGTCTCCGCCCTTTCTAATGATTCCAGTGGCAAAGATAGTATTAACTCCGGGAAGCATTCATCCTCAAGCAGCAAAACTGGCTCTATGGTTGCCATCATCCTCCTTGGGTTTTTGGTAGTTGTGTTATTATCATTTTTCCTTTTCAAGCTATGGCAGAAGAAGAGAAGAGAGGAGCAATATGCCCGACTTCTGAAATTGTTTGAAGAAGATGATGAGCTTGAGGTCGAACTTGGTCTTCGGGATTGA 1644 44.1 MALVLHSWKANKNAYKAFIAAEYNGVKIDLSPDFVMGVTNKSPEYLKMNPIGKVPVLETPDGAIFESNAIARYVARLKDSSLFGSSSIDYGHVEQWIDFSTTEIDAHISTILRPRFGYGVYHPAVEEAANAALKRSFAALNSYLASNTFLVGHSVTLADIILTCNLYLGFTYILTKSFTSEFPHVERYFWTLVNQPNFQKIIGEVKQTDAIPPVKTPEEAAAAAKPKPEPKKQEEKPKAAPAAEEEAPKPKAKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWLFRGQEIPQFVIDECYDMELYEWKKVDISDEAQKERVNQMIEDQEPFEGEALLDAKCFNFPFNFFHFSTASDRAFQFVAEVLDTDSQTIDMSRNLSRRSSDLVALSASLSLLFVSALSNDSSGKDSINSGKHSSSSSKTGSMVAIILLGFLVVVLLSFFLFKLWQKKRREEQYARLLKLFEEDDELEVELGLRD 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4362850 4370643 + CmoCh16G008300.1 Cmo16g00830 399865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00830 547 Pfam Elongation factor 1 gamma, conserved domain 251 359 IPR001662 GO:0003746|GO:0006414
Cmo16g00830 547 CDD GST_C_EF1Bgamma_like 89 209 - -
Cmo16g00830 547 SUPERFAMILY eEF1-gamma domain 253 411 IPR036433 GO:0003746|GO:0006414
Cmo16g00830 547 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 412 IPR044628 GO:0004364
Cmo16g00830 547 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 86 214 IPR010987 -
Cmo16g00830 547 SUPERFAMILY GST C-terminal domain-like 73 210 IPR036282 -
Cmo16g00830 547 SFLD Main (cytGST) 4 189 - -
Cmo16g00830 547 Pfam Glutathione S-transferase, N-terminal domain 5 76 IPR004045 -
Cmo16g00830 547 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Cmo16g00830 547 Pfam Glutathione S-transferase, C-terminal domain 125 196 IPR004046 -
Cmo16g00830 547 Gene3D - 79 212 - -
Cmo16g00830 547 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 252 412 IPR001662 GO:0003746|GO:0006414
Cmo16g00830 547 MobiDBLite consensus disorder prediction 216 255 - -
Cmo16g00830 547 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 252 412 IPR036433 GO:0003746|GO:0006414
Cmo16g00830 547 MobiDBLite consensus disorder prediction 222 252 - -
Cmo16g00830 547 CDD GST_N_EF1Bgamma 3 77 - -
Cmo16g00830 547 SUPERFAMILY Thioredoxin-like 2 78 IPR036249 -
Cmo16g00830 547 SMART EF1G_2 251 359 IPR001662 GO:0003746|GO:0006414
Cmo16g00830 547 Gene3D Glutaredoxin 1 74 - -
Cmo16g00830 547 SFLD Glutathione Transferase (cytosolic) 4 189 IPR040079 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00957 Cmo16g00830 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo09g01307 Cmo-Chr9:11611315 Cmo16g00830 Cmo-Chr16:4362850 9.87E-10 dispersed
Cmo16g00830 Cmo-Chr16:4362850 Cmo17g01082 Cmo-Chr17:8958042 2.30E-09 dispersed
Cmo04g00958 Cmo-Chr4:4879799 Cmo16g00830 Cmo-Chr16:4362850 6.28E-26 transposed
Cmo06g00918 Cmo-Chr6:6516291 Cmo16g00830 Cmo-Chr16:4362850 1.82E-82 transposed
Cmo16g00830 Cmo-Chr16:4362850 Cmo04g00957 Cmo-Chr4:4875621 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00830 K03233 - csv:101215571 697.197