Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g00830 | ATGGCTCTGGTCCTGCATTCTTGGAAGGCTAACAAAAATGCTTACAAGGCTTTTATAGCTGCTGAATACAATGGTGTCAAAATTGACCTTTCTCCAGATTTTGTCATGGGCGTAACCAATAAAAGTCCTGAATATCTGAAAATGAATCCTATTGGGAAGGTTCCTGTGTTGGAAACACCCGACGGTGCTATCTTTGAGAGCAATGCTATAGCTCGCTATGTTGCTCGTTTGAAGGACAGCAGTTTATTTGGCTCTTCCTCAATTGACTACGGACATGTTGAACAATGGATCGATTTCTCCACAACGGAAATAGATGCTCATATTTCAACAATTTTGAGGCCTAGATTTGGATATGGTGTTTACCATCCTGCTGTAGAAGAAGCTGCAAACGCTGCCCTAAAACGATCTTTTGCTGCTTTGAACTCTTACCTTGCTTCAAACACATTCCTTGTTGGTCATTCTGTGACACTGGCTGATATCATTTTGACATGCAATCTCTATTTGGGATTTACGTATATATTGACTAAAAGCTTTACTTCCGAGTTCCCTCACGTCGAGAGGTACTTCTGGACGTTGGTCAATCAACCAAATTTCCAAAAGATAATTGGTGAGGTAAAGCAGACTGATGCCATTCCACCAGTGAAAACACCTGAAGAGGCTGCAGCAGCTGCCAAACCAAAGCCTGAGCCCAAGAAACAAGAAGAGAAGCCCAAAGCAGCACCTGCTGCAGAAGAGGAGGCACCAAAGCCGAAGGCCAAAAATCCTCTCGACCTGCTTCCTCCCAGTAAGATGATTTTGGACGAGTGGAAACGTCTCTACTCGAACACTAAAACCAACTTCCGTGAGGTTGCAATCAAAGGATTCTGGGACATGTATGACCCTGAAGGATACTCCCTTTGGTTCTGTGATTACAAATACAACGACGAGAACACAGTTTCATTCGTGACTTTGAACAAAGTCAGCGGATTTCTTCAGAGAATGGATCTTGCTCGCAAGTATGCCTTCGGAAAGATGCTCGTGATCGGATCAGAGGCTCCATTCAAGGTGAAGGGGCTATGGCTTTTCCGTGGACAAGAAATCCCGCAATTTGTGATCGATGAATGCTATGATATGGAACTATACGAGTGGAAGAAGGTGGATATCTCGGACGAAGCCCAGAAGGAGAGGGTGAACCAAATGATTGAAGACCAGGAACCATTCGAGGGTGAAGCTCTTTTGGATGCTAAATGCTTCAACTTTCCCTTCAACTTCTTCCATTTCTCTACTGCCAGCGATCGAGCGTTTCAATTTGTTGCGGAGGTTCTAGATACGGATAGTCAGACAATCGATATGAGCAGAAATTTGAGTCGCAGATCGTCTGATTTGGTTGCGCTTTCCGCTTCGCTTTCCCTACTTTTCGTCTCCGCCCTTTCTAATGATTCCAGTGGCAAAGATAGTATTAACTCCGGGAAGCATTCATCCTCAAGCAGCAAAACTGGCTCTATGGTTGCCATCATCCTCCTTGGGTTTTTGGTAGTTGTGTTATTATCATTTTTCCTTTTCAAGCTATGGCAGAAGAAGAGAAGAGAGGAGCAATATGCCCGACTTCTGAAATTGTTTGAAGAAGATGATGAGCTTGAGGTCGAACTTGGTCTTCGGGATTGA | 1644 | 44.1 | MALVLHSWKANKNAYKAFIAAEYNGVKIDLSPDFVMGVTNKSPEYLKMNPIGKVPVLETPDGAIFESNAIARYVARLKDSSLFGSSSIDYGHVEQWIDFSTTEIDAHISTILRPRFGYGVYHPAVEEAANAALKRSFAALNSYLASNTFLVGHSVTLADIILTCNLYLGFTYILTKSFTSEFPHVERYFWTLVNQPNFQKIIGEVKQTDAIPPVKTPEEAAAAAKPKPEPKKQEEKPKAAPAAEEEAPKPKAKNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWLFRGQEIPQFVIDECYDMELYEWKKVDISDEAQKERVNQMIEDQEPFEGEALLDAKCFNFPFNFFHFSTASDRAFQFVAEVLDTDSQTIDMSRNLSRRSSDLVALSASLSLLFVSALSNDSSGKDSINSGKHSSSSSKTGSMVAIILLGFLVVVLLSFFLFKLWQKKRREEQYARLLKLFEEDDELEVELGLRD | 547 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 4362850 | 4370643 | + | CmoCh16G008300.1 | Cmo16g00830 | 399865 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g00830 | 547 | Pfam | Elongation factor 1 gamma, conserved domain | 251 | 359 | IPR001662 | GO:0003746|GO:0006414 | |
Cmo16g00830 | 547 | CDD | GST_C_EF1Bgamma_like | 89 | 209 | - | - | |
Cmo16g00830 | 547 | SUPERFAMILY | eEF1-gamma domain | 253 | 411 | IPR036433 | GO:0003746|GO:0006414 | |
Cmo16g00830 | 547 | PANTHER | ELONGATION FACTOR 1-GAMMA 1-RELATED | 1 | 412 | IPR044628 | GO:0004364 | |
Cmo16g00830 | 547 | ProSiteProfiles | Soluble glutathione S-transferase C-terminal domain profile. | 86 | 214 | IPR010987 | - | |
Cmo16g00830 | 547 | SUPERFAMILY | GST C-terminal domain-like | 73 | 210 | IPR036282 | - | |
Cmo16g00830 | 547 | SFLD | Main (cytGST) | 4 | 189 | - | - | |
Cmo16g00830 | 547 | Pfam | Glutathione S-transferase, N-terminal domain | 5 | 76 | IPR004045 | - | |
Cmo16g00830 | 547 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 1 | 82 | IPR004045 | - | |
Cmo16g00830 | 547 | Pfam | Glutathione S-transferase, C-terminal domain | 125 | 196 | IPR004046 | - | |
Cmo16g00830 | 547 | Gene3D | - | 79 | 212 | - | - | |
Cmo16g00830 | 547 | ProSiteProfiles | Elongation factor 1 (EF-1) gamma C-terminal domain profile. | 252 | 412 | IPR001662 | GO:0003746|GO:0006414 | |
Cmo16g00830 | 547 | MobiDBLite | consensus disorder prediction | 216 | 255 | - | - | |
Cmo16g00830 | 547 | Gene3D | Translation elongation factor EF1B, gamma chain, conserved domain | 252 | 412 | IPR036433 | GO:0003746|GO:0006414 | |
Cmo16g00830 | 547 | MobiDBLite | consensus disorder prediction | 222 | 252 | - | - | |
Cmo16g00830 | 547 | CDD | GST_N_EF1Bgamma | 3 | 77 | - | - | |
Cmo16g00830 | 547 | SUPERFAMILY | Thioredoxin-like | 2 | 78 | IPR036249 | - | |
Cmo16g00830 | 547 | SMART | EF1G_2 | 251 | 359 | IPR001662 | GO:0003746|GO:0006414 | |
Cmo16g00830 | 547 | Gene3D | Glutaredoxin | 1 | 74 | - | - | |
Cmo16g00830 | 547 | SFLD | Glutathione Transferase (cytosolic) | 4 | 189 | IPR040079 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g00957 | Cmo16g00830 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo09g01307 | Cmo-Chr9:11611315 | Cmo16g00830 | Cmo-Chr16:4362850 | 9.87E-10 | dispersed | |
Cmo16g00830 | Cmo-Chr16:4362850 | Cmo17g01082 | Cmo-Chr17:8958042 | 2.30E-09 | dispersed | |
Cmo04g00958 | Cmo-Chr4:4879799 | Cmo16g00830 | Cmo-Chr16:4362850 | 6.28E-26 | transposed | |
Cmo06g00918 | Cmo-Chr6:6516291 | Cmo16g00830 | Cmo-Chr16:4362850 | 1.82E-82 | transposed | |
Cmo16g00830 | Cmo-Chr16:4362850 | Cmo04g00957 | Cmo-Chr4:4875621 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g00830 | K03233 | - | csv:101215571 | 697.197 |