Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00839 ATGTACAGAGGACAGTACAGCCCTGAGATTCCTGGCTCCTCTTCTTCCCACAGTTTGGTCAGTGATTTCCATGTTTTGCTTGCTCTCAAACAAGGGTTTCAATTCTCTGACTCTGCTATACTAAGCACTTGGAATGCCTCAAACTTCAGCTCAGTTTGTTCGTGGGTCGGGATTCAGTGCGCTGATGGACGAGTTGTGTCGGTTGACTTGAGAGATTTGAACCTTGGTGGCTCTGTTTCACCGTTGATTTCGAGTCTTGACCAACTTTCTGAGTTGTCTTTAGCAGGAAATAACTTCTCTGGTGGCATTGAAGTAGCGAATTTGAGTTACCTTCGATTCCTCAACATCTCAACCAATCAGTTCACTGGGACTCTGGACTGGAACTTCTCGAGCCTGCCGAACTTGGAGGTGTTCGATGTCTATGACAACAACTTCTCTGCTCAGCTCCCCACTAAGATTTTGAACTTACGGAACCTCAAATACTTGGACCTTGGAGGTAACTATTTCCATGGAAAAATCCCTGAGAGCTATGGCAGTTTCGAAGAGTTGCAATATCTTTCTCTTGAAGGAAATAATTTGGTTGGGAAAATCCCAGAAGAACTGGGAAATCTCACGAATTTGAGAGAAATTTACTTGGGTCATTTCAATGCTTTCGAAGGTGGGATTCCACCTGAGCTTGGGAAGTTGGTCAATTTGGTTATCATGCAGATTACAGACTGCAGTTTGAATGGTCAAATTCCTCATGAACTTGGGAATTTGAAGGCCTTGAACACACTATATTTGTATACAAATCAACTCTCGGGTTCGATTCCGAAGCAGTTAGGCAATTTGACAAACTTGGTCTATCTTGATCTCTCCAACAATGCACTCACCGGAGAAATCCCATCTGAGTTTGTTAATCTCAAACAGCTCAAGCTTTACAACCTCTTCATCAACAAACTGCACGGATCTATTCCAGACTACATAGCAGATTTACCAAACTTAGAGACATTGGCACTGTGGATGAACAACTTTACCGGCACAATCCCGAAGATTCTTGGCCAAAATGGGAGGCTTCGGCTCCTCGATTTGTCTTCAAACAAGCTCACAGGTATAATACCGCAAGATTTGTGTTCATCGAATCAGCTGACAATACTGATTCTGATGAACAACTTCCTGTTTGGACCAATCCCTGATGGTTTGGGGACATGTACCAGTCTTATAAAAGTGAGGTTGGGGCAGAACTATCTGAATGGAAGCATTCCCAATGGCTTCATTTACTTGCCTCAACTAAATTTAGCAGAGTTTCAGGACAACTACCTTTCAGGTACACTTTCAGAAAATTGGGAGAGTTCATCAAAACCCATCAAATTAGGGCAACTTAATCTCTCTAACAATCTTCTCTCAGGATCTTTACCATCTTCACTTTCTAATTTCTCCTCTCTGCAAATTCTCCTCCTCAATGGCAACCAGTTTTCTGGTACAATCCCTCCTTCCATTGGAGAACTCAATCAACTTCTAAAGCTTGATCTTAGCAGAAACACACTTTCTGGTCAAATTCCACCTGAAATAGGGAATTGTATCCATCTTACTTATCTTGATTTGAGCAAGAACAACCTCTCTGGCCCAATTCCACCTGAAATTTCGAATATAAATATTCTCAATTACCTCAACTTGTCGAGAAATCATCTAAATCAATCCCTACCGAAATCAATAGGGGCAATGAAGAGCCTTACGATTGCTGATTTCTCCTTCAATGATTTCTCCGGAAAGTTACCGGAATCAGGACAACTTGCCTTCTTCAATGCATCGTCCTTTGCCGGAAATCCTCAACTCTGCGGCTCTCTCCTCAACAATCCCTGCAACTTCGCAACAACATCGACAAAACCGGGGAAAACTCCGGCGTACTTCAAGCTAATCTTCGCTCTCGGCCTGCTGATTTGCTCTCTAGTGTTCGCCATAGCGGCTGTAGTCAAAGCGAAATCATTCAAAAGAAACGGATCGAGTTCATGGAAAATGACCTCATTCCAAAAGCTCGATTTCACAGTCTACGACGTCTTGGAGTGCGTGAAAGACGGCAACGTGATCGGAAGAGGCGGCGCTGGCATTGTCTACCACGGGAAAATGCCAAACGGAGTCGAGATCGCAGTGAAGAAACTCCTAGGATTTGGCCCTAACAGTCACGACCATGGATTCCGAGCCGAAATCCAAACCCTAGGCAACATTCGACACCGAAACATCGTCAGATTACTCGCATTCTGCTCCAATAAAGAGACAAATCTCCTCGTATACGAATACATGAGGAACGGAAGCTTAGGTGAAGCACTCCACGGCAAAAAGGCCTCGTTTCTCGGATGGAATTTGAGGTGCAAAATCGCCATTGAGGCTGCCAAAGGTCTCTGCTACCTCCACCACGATTGCTCTCCACTAATCGTCCACCGAGACGTGAAATCAAACAACATTCTCTTGAATTCCAACTTCGAAGCTCACGTCGCCGATTTCGGTCTGGCGAAGTTCATGTTCGAGGGCGGCGCGTCGGAATGCATGTCGTATTCATTAAAATATGCGTACACATTGAGAGTTGACGAGAAAAGTGACGTATATAGTTTTGGAGTTGTGCTATTAGAGCTTTTGACGGGTCGTCGTCCAGTTGGAGATTTCGAGGACGGAGTGGTTGACATAGCACAATGGTGCAAAAGAGCTCTAACAAATGGTGAGAATGAAAACGACATTATTTGCATAGTTGACAAAAGGATCGGGATGGTACCTAAAGAGGAAGCAAAACACTTATTCTTCATAGCAATGTTATGTGTGCAAGAGAACAGCGTGGAAAGACCAACAATGAGAGAAGTGGTTCAAATGTTGGCCGAGTTTTCTCATCAGTTTCCCAAATCTTTCCAATCTCCCTCTTCTTCTTCTTCTCCCGATCAAAATTTGAAGAACGGCGAAAAGGAGAGAGAAGATCCCTCGAAATCCAAACTCGATCTTTTGGTTTAA 2976 43.85 MYRGQYSPEIPGSSSSHSLVSDFHVLLALKQGFQFSDSAILSTWNASNFSSVCSWVGIQCADGRVVSVDLRDLNLGGSVSPLISSLDQLSELSLAGNNFSGGIEVANLSYLRFLNISTNQFTGTLDWNFSSLPNLEVFDVYDNNFSAQLPTKILNLRNLKYLDLGGNYFHGKIPESYGSFEELQYLSLEGNNLVGKIPEELGNLTNLREIYLGHFNAFEGGIPPELGKLVNLVIMQITDCSLNGQIPHELGNLKALNTLYLYTNQLSGSIPKQLGNLTNLVYLDLSNNALTGEIPSEFVNLKQLKLYNLFINKLHGSIPDYIADLPNLETLALWMNNFTGTIPKILGQNGRLRLLDLSSNKLTGIIPQDLCSSNQLTILILMNNFLFGPIPDGLGTCTSLIKVRLGQNYLNGSIPNGFIYLPQLNLAEFQDNYLSGTLSENWESSSKPIKLGQLNLSNNLLSGSLPSSLSNFSSLQILLLNGNQFSGTIPPSIGELNQLLKLDLSRNTLSGQIPPEIGNCIHLTYLDLSKNNLSGPIPPEISNINILNYLNLSRNHLNQSLPKSIGAMKSLTIADFSFNDFSGKLPESGQLAFFNASSFAGNPQLCGSLLNNPCNFATTSTKPGKTPAYFKLIFALGLLICSLVFAIAAVVKAKSFKRNGSSSWKMTSFQKLDFTVYDVLECVKDGNVIGRGGAGIVYHGKMPNGVEIAVKKLLGFGPNSHDHGFRAEIQTLGNIRHRNIVRLLAFCSNKETNLLVYEYMRNGSLGEALHGKKASFLGWNLRCKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLNSNFEAHVADFGLAKFMFEGGASECMSYSLKYAYTLRVDEKSDVYSFGVVLLELLTGRRPVGDFEDGVVDIAQWCKRALTNGENENDIICIVDKRIGMVPKEEAKHLFFIAMLCVQENSVERPTMREVVQMLAEFSHQFPKSFQSPSSSSSPDQNLKNGEKEREDPSKSKLDLLV 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4422624 4427395 + CmoCh16G008390.1 Cmo16g00839 399874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00839 991 Gene3D Ribonuclease Inhibitor 21 129 IPR032675 -
Cmo16g00839 991 Pfam Leucine rich repeat 326 384 IPR001611 GO:0005515
Cmo16g00839 991 Gene3D Transferase(Phosphotransferase) domain 1 760 969 - -
Cmo16g00839 991 SMART LRR_typ_2 325 349 IPR003591 -
Cmo16g00839 991 SMART LRR_typ_2 277 300 IPR003591 -
Cmo16g00839 991 SMART LRR_typ_2 180 204 IPR003591 -
Cmo16g00839 991 SMART LRR_typ_2 132 156 IPR003591 -
Cmo16g00839 991 SMART LRR_typ_2 544 568 IPR003591 -
Cmo16g00839 991 SMART LRR_typ_2 253 276 IPR003591 -
Cmo16g00839 991 SMART LRR_typ_2 350 373 IPR003591 -
Cmo16g00839 991 SMART LRR_typ_2 496 520 IPR003591 -
Cmo16g00839 991 SMART serkin_6 683 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00839 991 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 13 954 - -
Cmo16g00839 991 Gene3D Ribonuclease Inhibitor 317 622 IPR032675 -
Cmo16g00839 991 MobiDBLite consensus disorder prediction 956 991 - -
Cmo16g00839 991 MobiDBLite consensus disorder prediction 956 971 - -
Cmo16g00839 991 PANTHER UNNAMED PRODUCT 13 954 - -
Cmo16g00839 991 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672|GO:0006468
Cmo16g00839 991 SUPERFAMILY RNI-like 67 387 - -
Cmo16g00839 991 Pfam Leucine rich repeat N-terminal domain 21 60 IPR013210 -
Cmo16g00839 991 ProSiteProfiles Leucine-rich repeat profile. 351 372 IPR001611 GO:0005515
Cmo16g00839 991 MobiDBLite consensus disorder prediction 972 991 - -
Cmo16g00839 991 PRINTS Leucine-rich repeat signature 352 365 - -
Cmo16g00839 991 PRINTS Leucine-rich repeat signature 496 509 - -
Cmo16g00839 991 Pfam Protein tyrosine and serine/threonine kinase 686 948 IPR001245 GO:0004672|GO:0006468
Cmo16g00839 991 Pfam Leucine Rich Repeat 279 301 IPR001611 GO:0005515
Cmo16g00839 991 Gene3D Ribonuclease Inhibitor 217 316 IPR032675 -
Cmo16g00839 991 SUPERFAMILY Protein kinase-like (PK-like) 667 949 IPR011009 -
Cmo16g00839 991 Gene3D Ribonuclease Inhibitor 130 216 IPR032675 -
Cmo16g00839 991 ProSiteProfiles Protein kinase domain profile. 683 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00839 991 Gene3D Phosphorylase Kinase; domain 1 648 759 - -
Cmo16g00839 991 SUPERFAMILY L domain-like 350 607 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00002 Cmo-Chr7:12038 Cmo16g00839 Cmo-Chr16:4422624 0 dispersed
Cmo07g00616 Cmo-Chr7:2771862 Cmo16g00839 Cmo-Chr16:4422624 0 dispersed
Cmo16g00796 Cmo-Chr16:4048232 Cmo16g00839 Cmo-Chr16:4422624 0 dispersed
Cmo16g00839 Cmo-Chr16:4422624 Cmo04g00967 Cmo-Chr4:4920178 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74971 PF07714 PK_Tyr_Ser-Thr 1.80E-38 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00839 - - csv:101215633 1678.69