Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00845 ATGGCTACGGTTCTCGATTCCCTCACTCTTCCCTGTTCTTCCGCCTTGGCTTCCACTGCTTTCTCCGGCCGTCGGAGCTCCGTCGCCCTCCCGCAGTACAGAGGCTTGAAGATCGGTCACAGTTTAACTTCCCAGTCTATAAGATCTGCGAGATCTAATGCCAGATTTGCTCAGCGTTCTGGAAGAATCGTCTGCGAAGCTCAGGAAACTGCTGCCATTGTACCTGCTGCTTCAGAAGCTACCTGGGATTCACTGGTTCTTAAATCCGAATTACCCGTCCTAGTCGAATTCTGGGCTCCATGGTGCGGTCCTTGCCGCATGATTCATCCGATCGTTGACGAACTATCTAAACAGTATGCTGGTAAGTTCAAATTTTACAAGGTGGATACTGATAGCAACTCTGGTGTTGCATCCCGATATGGTATCAGAAGCATACCAACTGTCATTATCTTCAAAGATGGTGAGAAAAAGGAGGCAATAATAGGTGCAGTTCCCAAAGCAACTTTGACTGCCAGCATTGAAAAATTCTTGTAG 534 47.75 MATVLDSLTLPCSSALASTAFSGRRSSVALPQYRGLKIGHSLTSQSIRSARSNARFAQRSGRIVCEAQETAAIVPAASEATWDSLVLKSELPVLVEFWAPWCGPCRMIHPIVDELSKQYAGKFKFYKVDTDSNSGVASRYGIRSIPTVIIFKDGEKKEAIIGAVPKATLTASIEKFL 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4457627 4461197 + CmoCh16G008450.1 Cmo16g00845 399880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00845 177 ProSitePatterns Thioredoxin family active site. 94 112 IPR017937 -
Cmo16g00845 177 PANTHER GEO12009P1 10 177 - -
Cmo16g00845 177 TIGRFAM thioredoxin: thioredoxin 78 176 IPR005746 GO:0015035
Cmo16g00845 177 ProSiteProfiles Thioredoxin domain profile. 68 177 IPR013766 -
Cmo16g00845 177 CDD TRX_family 80 174 - -
Cmo16g00845 177 SUPERFAMILY Thioredoxin-like 74 177 IPR036249 -
Cmo16g00845 177 Pfam Thioredoxin 77 174 IPR013766 -
Cmo16g00845 177 Gene3D Glutaredoxin 74 177 - -
Cmo16g00845 177 PRINTS Thioredoxin family signature 93 101 - -
Cmo16g00845 177 PRINTS Thioredoxin family signature 101 110 - -
Cmo16g00845 177 PRINTS Thioredoxin family signature 141 152 - -
Cmo16g00845 177 PANTHER THIOREDOXIN-1-LIKE 10 177 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00845 K03671 trxA; thioredoxin 1 - csv:101204508 298.516
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00973 Cmo16g00845 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02534 Cmo-Chr4:18609825 Cmo16g00845 Cmo-Chr16:4457627 7.85E-47 dispersed
Cmo07g01304 Cmo-Chr7:7263762 Cmo16g00845 Cmo-Chr16:4457627 3.71E-07 dispersed
Cmo09g01181 Cmo-Chr9:8373415 Cmo16g00845 Cmo-Chr16:4457627 1.08E-20 dispersed
Cmo15g00640 Cmo-Chr15:3103449 Cmo16g00845 Cmo-Chr16:4457627 5.40E-46 dispersed
Cmo16g00845 Cmo-Chr16:4457627 Cmo12g00390 Cmo-Chr12:2418405 8.36E-17 dispersed
Cmo11g01367 Cmo-Chr11:9559177 Cmo16g00845 Cmo-Chr16:4457627 3.82E-36 transposed
Cmo16g00845 Cmo-Chr16:4457627 Cmo04g00973 Cmo-Chr4:4945334 1.46E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1096 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo16g00845 . . . . . . . . . . . . . . . . . . . . . . Chy06g01693 .
Vvi19g240 . . . . . . Bma10g00502 . Cmo16g00845 Cmo04g00973 . . . . . . . . . . . . . . Cla10g00647 Cam10g0643 Cec10g0664 Cco10g0639 Clacu10g0666 Cmu10g1493 Cre10g0874 . . Cone14ag1070 Cone15ag1059 . Csa03g00627 . . . . . Bda12g00865 . Bpe03g00834 . . . . . Cma04g00906 Cma16g00782 Car04g00849 . Cpe14g00681 . . . . . . . . . . . . . . . Lsi05g00715 . Chy06g01700 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004200 2 2 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00845 Cmo_Chr16 FPKM 12.223556 11.050357 7.116972 7.781288 9.315121 7.088626 9.241938 5.848894 5.854293 6.196468