Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00851 ATGGCAGAGCTAGACATCGAATCCCACACAAACCCCACCATTAACACCACAGATTCTTCGGAAGCCGCTGCCTTTTTCCGCAAAGAAAACCGCCCACTCACGTTAAAGTTCCACAACGTCATATACAAGATCAAATCCAAGAAATCAAATTTGGAAGAGAAAACAATCTTGAAAGGTATAAGCGGAGTGGTTCGACCAGGGGAGATGTTAGCCATGATGGGTCCATCGGGGTCTGGAAAAACCACTCTTCTCACAGCCATTGGAGGCCGCTTGGGTGGGCGTCTCGAAGGAACCATTTCTTATAACAATAAACCCTTCTCCAATCAAATTAAACGCAACATTGGCTTTGTAACCCAAGATGACATTCTTCTTCCCCATTTGACCGTCACTGAAACCCTTGTTTTCACTGCGCTTTTAAGGCTTCCAAATGCCTTGACCAAGCACCAGAAATTGGCTCACGCAGAGGCTGTCCTGTCCCAGCTTGGTCTCATTAAGTGCAAGAACAGCGTCGTGGGTGACCAAAGACTAAGAGGGGTTTCTGGGGGAGAGAGGAAAAGGGTCAGCATTGGCCAAGAAATGCTCATAAACCCTAGTCTTCTGTTTCTTGACGAACCCACTTCGGGTCTTGACTCCACCACGGCTCAGAGGATCGTTTCCACTCTCTGGGAGCTCGCTCATAATGGTGGGAAGACTGTGGTTATGACCATTCATCAGCCTTCCAGCCGCCTTTTCTATATGTTTCATAAGATCTTGTTGTTGTCCGAAGGCAACACGATGTATTTTGGGAAAGGATCCGAAGCCATGGATTATTTCTCCACTCTTGGCTACTCTGTTTCTGTGCCTATGAACCCTTCTGATTTCTTGTTGGATCTTGCTAATGGTATGCCATTTTTTTCTTTCATTTGCTTAAAGAATTGTGGTTTTGGAGTGTTCTTGACAGAGTTAGCCGCAGGTTTGTCAATGAATGATCCGGAAGAGGAGGCCACCATGATTAAGGAGAAGCTTGTTTCATGTTACAAGAACAGTGACATGGCTGAAAACTTGGAGTTAGAGGTAAAAGAAAGTGATGAACATTTGGATGAAGATGCCACAATAAACAAGAGATTTGAGCGATGGTCTACCACTTGGTGGCAACAATTCTGTGTTCTCTTGAACAGAGGAATTAAGGAAAGAAAGCATGAATCCTTTTCTGGGCTCAAGATTGCCCAAGTTTTAGCTGTGGCTTTCATCAGTGGGCTGTTATGGTGGCAATCTGATGATGCCCATTTACAAGACAAGATTGGATTGTTCTACTTCTCCTCAAGCTTCTGGGGTTTCTTCCCTCTTTTGCAAGCTATCAGCACCTTTCCAAGAGAAAGAATGATACTCGAAAAGGAGAGATCTTCAGGAATGTACCGCCTCTCGTCTTACTTCATTTCAAGAACCATAAGCGACCTCCCAATGGAGCTCATCCTTCCCACCGTCTTCATCCTCATAATCTACGGGATGGCAGGGTTGAAACGAACCGTGACGAGTTTCTTTTCGACCCTATTTTATCAGCTCCTGAGTGTTTTAGTGTCCCAAGGGTTTGGTCTGGCGGTTGGCGCGCTTGTTTTGGACCAAACTTCAGCTACCACACTTGGATCAGTTATCATGCTTTGTTTCCTTCTAACATCGGGCTATTTTGTTCAGCATGTGCCGGGGTTTATTGCTTGGACCAAGTACATTTCTATTGGTACTTATACTTATAAGCTTTTGCTGATATCTCAATACAAAGCTACTGATACTTATCTATGTCCGGGCCATGGAGTGGGGGTGTGTGAAGTTGGAGAGTTCCCTGCAATTAAGCAAATGGGTCTTCATGGGAAAACCACTGCTATTTTGGCTTTGATGGCTATGCTCGTTGGATATCGTCTTGTTGCTTATATTGCTTTGATGAGGATTGGTGTAACTAAGAAGGAATAG 1944 44.7 MAELDIESHTNPTINTTDSSEAAAFFRKENRPLTLKFHNVIYKIKSKKSNLEEKTILKGISGVVRPGEMLAMMGPSGSGKTTLLTAIGGRLGGRLEGTISYNNKPFSNQIKRNIGFVTQDDILLPHLTVTETLVFTALLRLPNALTKHQKLAHAEAVLSQLGLIKCKNSVVGDQRLRGVSGGERKRVSIGQEMLINPSLLFLDEPTSGLDSTTAQRIVSTLWELAHNGGKTVVMTIHQPSSRLFYMFHKILLLSEGNTMYFGKGSEAMDYFSTLGYSVSVPMNPSDFLLDLANGMPFFSFICLKNCGFGVFLTELAAGLSMNDPEEEATMIKEKLVSCYKNSDMAENLELEVKESDEHLDEDATINKRFERWSTTWWQQFCVLLNRGIKERKHESFSGLKIAQVLAVAFISGLLWWQSDDAHLQDKIGLFYFSSSFWGFFPLLQAISTFPRERMILEKERSSGMYRLSSYFISRTISDLPMELILPTVFILIIYGMAGLKRTVTSFFSTLFYQLLSVLVSQGFGLAVGALVLDQTSATTLGSVIMLCFLLTSGYFVQHVPGFIAWTKYISIGTYTYKLLLISQYKATDTYLCPGHGVGVCEVGEFPAIKQMGLHGKTTAILALMAMLVGYRLVAYIALMRIGVTKKE 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4504237 4506500 + CmoCh16G008510.1 Cmo16g00851 399886

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00851 647 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 35 280 IPR003439 GO:0005524
Cmo16g00851 647 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 14 642 - -
Cmo16g00851 647 ProSitePatterns ABC transporters family signature. 179 193 IPR017871 GO:0005524
Cmo16g00851 647 CDD ABCG_EPDR 32 262 - -
Cmo16g00851 647 Pfam ABC-2 type transporter 378 583 IPR013525 GO:0016020|GO:0140359
Cmo16g00851 647 Pfam ABC transporter 57 207 IPR003439 GO:0005524
Cmo16g00851 647 SMART AAA_5 66 257 IPR003593 -
Cmo16g00851 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 276 IPR027417 -
Cmo16g00851 647 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 14 642 - -
Cmo16g00851 647 Pfam ABC-2 type transporter 237 295 IPR043926 GO:0140359
Cmo16g00851 647 Gene3D - 34 274 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00851 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101213406 942.954
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00550 Cmo-Chr16:2653973 Cmo16g00851 Cmo-Chr16:4504237 0 dispersed
Cmo16g00851 Cmo-Chr16:4504237 Cmo16g00990 Cmo-Chr16:6805371 1.58E-158 dispersed
Cmo16g00851 Cmo-Chr16:4504237 Cmo04g00647 Cmo-Chr4:3214782 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g270 . . . . . . . . Cmo16g00851 . . . . . . . . . . . . . . . Cla10g00629 Cam10g0620 Cec10g0650 Cco10g0625 Clacu10g0651 Cmu10g1474 Cre10g0861 . . Cone14ag1077 . . Csa03g00613 . . . . . . . . . . . . . . . . . Cpe14g00687 . . . . . . . . . . . . . . . Lsi05g00704 . Chy06g01711 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003135 1 2 2 2 2 2 0 2 2 2 2 2 3 2 2 1 2 2 1 2 2 2 1 0 3 1 2 1 2 1 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00851 Cmo_Chr16 FPKM 14.919949 12.926106 4.718331 4.574418 10.090314 12.908339 9.764045 4.132846 4.55579 4.150464