Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00863 ATGGCCGCCACCGCCACCTCCACCGGCCTCCTCCGGGCCACCCCCTTTCTGGGTCAGACCAGATCCTCCCCCCAGAACCCCCTCAGAGATGTCGTCGCCATGGGAACTCCCAAATACACCATGGGAAATGATCTGTGGTATGGACCAGACAGAGTCAAGTACTTGGGACCCTTTTCAGCTCAGACTCCCTCCTACTTGAACGGCGAGTTCCCCGGCGATTATGGATGGGACACTGCCGGCTTGTCCGCCGATCCCGAGGCCTTCGCCAAGAACAGAGCTCTCGAGGTGATCCACGGGAGGTGGGCTATGCTGGGAGCCTTCGGTTGCATAACACCGGAAGTCCTAGAAAAATGGCTGAAAGTGGACTTCAAGGAGCCGGTATGGTTCAAGGCCGGCGCCCAAATCTTCTCAGAAGGCGGGCTGGATTACTTGGGGAACCCAAATCTGGTCCACGCGCAAAGCATCCTGGCCGTGTTGGGCTTCCAAGTGGTCCTGATGGGATTGGTTGAAGGGTTCCGCATCAATGGCCTGGACGGCGTGGGTGAGGGCAACGACCTCTACCCAGGGGGTCAGTACTTCGACCCACTCGGACTGGCCGACGACCCCGTCACTTTCGCGGAGCTGAAGGTGAAGGAGATCAAGAATGGCCGCCTCGCCATGTTCTCCATGTTCGGGTTCTTCGTTCAGGCCATCGTCACTGGAAAGGGCCCCCTCGAGAACCTGCTGGACCATCTGGATAACCCTGTCGCCAACAATGCTTGGGTTTATGCCACCAAGTTTGCCCCTGGCTCGGTTTTCGTTGTTAGTCTCCTCGGCGCTTATCTCTCAGCGATGGCGAAGAACAAGAATAAGAAGAAGCGAAGTGGGGCTATTTCAATGGACATAACCGAAAATACCGCTCAAGAGCTCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCCGGCGCTCTCAATCTAAAATTGAAAAAGGGAAGACCAATGAAGCGATCAAAGAATGTTAGGAAGACAATGGCGAAAGCAAAGGCCATATCCAAGAACGAGCAGTCAGCGGAGAAAATATTGAAAAATCAGAGCAAAACTACAAGAATACATTCTGCAAAAACATTAGGCTCACTGGTTTCTTTAGGTAAATATGTCGCCCCTTTGAAATTGCTTGGGGGACAATCCGCAGCTCAGGGTCAAACCAAAGATATTGATGAGTTAGTGGAGAGTACAAACAGCAGCAATCATTTTCATGCCATGGCTTTTGTAAATGCCATTTCTGGTAATGCTAATAATTTATCCAAGTCTTGTGAGGATATGGGTTATTCTGTTTTGATTATAGAAGGAGCTGCTCCTGTTTATACACTGGCTGATGGTGGCATTGGAGATTGGTTTGGAGGCTTCTTGTATTCAGCGGGACAACAGGCTAATGTTGCAGTTCAGGATCAGTTATCTGCTCTTAGTTTTACTAGTTTGGCAGTAATTTTTGGAGCAGGGTTTGTAACCAGCCTTTCCCCTTGTACGCTGAGTGTTTTGCCTTTGACACTTGGTTACATAGGAGCATTTGGATCAGGGAAGAGCAGAGCAGAGGTTGTTGGAAACTCTGTTGCTTTCGCATTAGGACTTGCTACGACCCTAGCGCTGTTAGGCATAGCAGCTTCCTTTGCTGGAAAGGCATATGGACAGATTGGCCAAGGATTACCATTAGCTGCTTCAGGCTTAGCTGTTATTATGGGCCTAAACCTCCTGGAGATAATTGAGTTGCAACTACCCTCATTCTTCGACAATTTCGATCCCCGTTCTGCTGCTGCCAACTTTCCATCAAGCGTGCAAGCATATCTGGCCGGGCTAACATTTGCTTTAGCAGCATCTCCTTGCAGTACTCCTGTGCTGGCTACTTTACTTGGATATGTAGCTACATCCAAGGATCCCATCGTCGGTGGAAGCCTCCTCTTGACGTACACAACGGGGTACGTCGTGCCGTTACTTCTTGCTGCCTCATTTGCTGGAGCATTGCAGAGCCTTCTGTCATTCCGCAAGTTCTCATCATGGATTAATCCTATAAGTGGAGCATTACTGTTGGGGGGAGGTGTTTATAGTTTCTTGGACAGATTATTTCCAGTCACCATGGCAATGTAG 2136 50.09 MAATATSTGLLRATPFLGQTRSSPQNPLRDVVAMGTPKYTMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWLKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFAPGSVFVVSLLGAYLSAMAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKNVRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLGSLVSLGKYVAPLKLLGGQSAAQGQTKDIDELVESTNSSNHFHAMAFVNAISGNANNLSKSCEDMGYSVLIIEGAAPVYTLADGGIGDWFGGFLYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVGNSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSFFDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPIVGGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4590539 4600415 - CmoCh16G008630.1 Cmo16g00863 399898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00863 711 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 3 264 IPR001344 GO:0009765|GO:0016020
Cmo16g00863 711 Pfam Cytochrome C biogenesis protein transmembrane region 494 700 IPR003834 GO:0016020|GO:0017004
Cmo16g00863 711 Pfam Chlorophyll A-B binding protein 63 230 IPR022796 -
Cmo16g00863 711 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 3 264 - -
Cmo16g00863 711 Gene3D Chlorophyll a/b binding protein domain 53 257 - -
Cmo16g00863 711 SUPERFAMILY Chlorophyll a-b binding protein 45 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00863 Cmo-Chr16:4590539 Cmo13g00573 Cmo-Chr13:6475233 7.74E-117 dispersed
Cmo04g00986 Cmo-Chr4:4982617 Cmo16g00863 Cmo-Chr16:4590539 0 transposed
Cmo09g00013 Cmo-Chr9:80869 Cmo16g00863 Cmo-Chr16:4590539 1.74E-58 transposed
Cmo16g00863 Cmo-Chr16:4590539 Cmo04g00985 Cmo-Chr4:4980276 2.02E-42 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00863 K08914 - bhj:120089728 542.732