Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00865 ATGGCCACCTCCTCCGACGAAGAAGTAGAAAAGGAATTACAAGAACACGACGGTGGCTTCTGCCGGAGCCTCTACGGGGTCGGCTCGGTTCTCGACCCGAGAGCCAAATGGGTCCGAGAATGGAACCGGGTCTTCCTCCTCGTCTCCGCCGCAGGCCTCTTCGTGGACCCTCTCTTCCTCTACACGCTCTCCATAAGCGAGTCATGGATGTGCTTGTTTGTTGATGGGTGGTTAGCCATCACCGTCACCGTCCTCCGCTGCACCGCTGACGCCTTCCACCTTTGGAACATGTGGCTCCAGCTCAAGACTGCCACAAGATACTCCTTCGCCGGTGGAGCTGCCACCGCAGCCACGCCGGAGAATAGAGGCCTTAGAGATTCCACCCCACGCGCCGTCGCTCTCCGCTACTTCAAATCCAAAAAAGGCTTCTTCTTTGATCTCTTCGTTATTCTTCCACTCCCACAGGTAGTATTATGGGTAGTAATTCCAAGAATAATGAAGGAAGGATCAGTGACATTGGTGATGACAGTATTGTTAATTGTATTTCTATTTCAATACTTACCTAAATTGTACCATTCCGTTTGCCTGTTGCGGCGCCTCCAAAACCTGTCGGGGTTCATCTTTGGCACGGTCTGGTGGGGCATTGCCCTCAATCTCATCGCTTACTTTGTTGCGGCTCACGCTGCAGGTGCATGCTGGTACCTGTTGGGTGTGCAAAGAGCAGCCAAGTGCCTTAAAGAGCAATGCAGAGGCACGAGCAGCTGTGGGGTGAGGCTGTTGTCGTGCAAAGATCGTATCTTTTATGGAGCCACCAAGATGGGAATGGGGAGAGACAGTGCAAGATTTGATTGGGCGAGTAACAGGCAACCGAAATTCATGTGTTTGGATACTGCTGATAACTTTAATTATGGAGCTTATAAATGGACTGTTCAGCTTGTTGTCAACCAAAGCCGCTTGGAGAAGATCCTTTTTCCCATCTTTTGGGGTCTCATGACTCTTAGTACCTTTGGGAACTTGGAGAGCACCACGGAATGGCTGGAAGTTGTGTTCAATATCATTGTTCTCACCAGTGGACTCTTATTGGTCACCATGTTGATAGGAAACATCAAGGTGTTTCTGCATGCAACAACGTCAAAGAAACAAGGAATGCAGCTAAAGATGAGGAATCTAGAGTGGTGGATGAGAAAGCGACATCTTCCACAAGGCTTCCGACAGCGTGTTCGGAACTTCGAACGGCAACGTTGGGCAGCGATGCGCGGAGTTGACGAGTGCGAGATGATCAAAAACCTACCGGAAGGGCTCCGACGAGAGATAAAGTATCACCTTTGCTTGGATCTAGTTAGGCAGGTACCATTGTTTCAACACATGGATGATCTTGTTCTTGAGAACATTTGTGACCGTGTCAAGTCCCTCATCTTCACCAAGGGCGAAACCATAACAAGAGAAGGCGACCCAGTTCAAAGAATGCTGTTTGTCGTGCGAGGGCATCTCCAAAGCAGCCAAGTCTTACGCGACGGCGTCAAAAGCTGCTGCATGTTGGGGCCAGGCAACTTCAGCGGCGACGAGCTTCTATCCTGGTGCCTCCGCCGCCCCTTCATAGAGCGGCTTCCGCCGTCCTCTTGCACTTTGGTTACACTTGAGACGACGGAGGCGTTTGGGTTGGAGGCGGAGGATGTCAAGTACGTAACCCAGCACTTTCGCTACACATTCGTCAACGACAAGGTCAAACGTAGCGCCCGCTACTACTCCCCTGGGTGGCGTACTTGGGCTGCCGTTGCCATCCAGCTCGCCTGGCGTCGTTATCGCCACCGGCTTACGTTAACATCGTTGTCGTTTATTCGGCCTCGGCGTCCCCTGTCGCGGTGCTCTTCCTTGGGGGAGGATCGCCTCCGCCTCTACACCGCGTTGCTTACTTCTCCCAAGCCCAATCAGGATCACTTCGATTTTTGA 1950 51.9 MATSSDEEVEKELQEHDGGFCRSLYGVGSVLDPRAKWVREWNRVFLLVSAAGLFVDPLFLYTLSISESWMCLFVDGWLAITVTVLRCTADAFHLWNMWLQLKTATRYSFAGGAATAATPENRGLRDSTPRAVALRYFKSKKGFFFDLFVILPLPQVVLWVVIPRIMKEGSVTLVMTVLLIVFLFQYLPKLYHSVCLLRRLQNLSGFIFGTVWWGIALNLIAYFVAAHAAGACWYLLGVQRAAKCLKEQCRGTSSCGVRLLSCKDRIFYGATKMGMGRDSARFDWASNRQPKFMCLDTADNFNYGAYKWTVQLVVNQSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQGMQLKMRNLEWWMRKRHLPQGFRQRVRNFERQRWAAMRGVDECEMIKNLPEGLRREIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSCTLVTLETTEAFGLEAEDVKYVTQHFRYTFVNDKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDHFDF 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4610071 4613857 + CmoCh16G008650.1 Cmo16g00865 399900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00865 649 Pfam Ion transport protein 41 369 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo16g00865 649 SUPERFAMILY cAMP-binding domain-like 378 566 IPR018490 -
Cmo16g00865 649 Gene3D Helix hairpin bin 377 443 - -
Cmo16g00865 649 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 6 646 - -
Cmo16g00865 649 ProSiteProfiles cAMP/cGMP binding motif profile. 452 531 IPR000595 -
Cmo16g00865 649 Pfam Cyclic nucleotide-binding domain 473 560 IPR000595 -
Cmo16g00865 649 Gene3D Jelly Rolls 450 568 IPR014710 -
Cmo16g00865 649 CDD CAP_ED 452 558 IPR000595 -
Cmo16g00865 649 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 646 - -
Cmo16g00865 649 SUPERFAMILY Voltage-gated potassium channels 33 373 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02924 Cmo-Chr4:20720536 Cmo16g00865 Cmo-Chr16:4610071 0 dispersed
Cmo16g00865 Cmo-Chr16:4610071 Cmo20g00529 Cmo-Chr20:2559226 6.79E-127 dispersed
Cmo16g00865 Cmo-Chr16:4610071 Cmo02g00904 Cmo-Chr2:5575654 2.17E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00865 K05391 - csv:101207531 1188.33