Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00870 ATGGCTGCTGAGATTAAGAATCTTGACACAGATCTACAAATGTTGGTTTATGAAAATTACAATAAGTTCATCAGTGCAACTGATACAATAAAAAGGTTAATAGTTATGTTGATGAATAATAATATCGTGGGGATGGAGACAAACATGGAACAACTACTTGAAAAAATACTGTCTGTGCAGTCTAGAAGTGATGGAGTTAATACTTCTCTCTTTGAAAAAAGAGAGCACATTGAGAAATTGCATCGAACACGAAACCTGCTTTGTAAAGTTCAGGTACCAAAAATACATTGTGATGGTATTGTTGTGCTTTTAGAAGTTACTGTAGATTTCATATATGATCTACCTGCTAGACTTGGAAAGTGCATCAAAACAGAAGCCTATGCTGATGCAGTCAGATTCTATACTGGTGCCATGCCAATATTTAAGGTGTATGGAGACTCCTCATTCCAAGATTGCAAGCGAGCATCAGAAGAAGCAATAGCAATAGTTTTGAAAAACTTGCAGGAAAAGCTATTCTCAGATTCTGAATCCATACAGACGAGAGCGGAGGCTGCAGTACTTCTTAAGCAGCTCGATTTCCCGGTGGACAGTTTAAAGGCAAAGTTGCTAGAAAAGTTGGAACAATCAACATTGGATCTTCAGCTTAATGCTGAGGATTTGAGTAGTGCATTAGTGATTGGCTCTTCAAAAGATGGAAATGTTTCTGAGTCAGTTTATGGTGCTTCACATGAGGTGGGTCCATTGGTTGTCATGGAGAATATCTTATCTTCCCTTTTGCTTTCATTTCTTTTTTGGAGTATGGAATGTTTCTGTATCTTAGCATCTGTTCGGGAGTTTGCAGAGGCAATCCGAGCTTATCGTGTAATATTTGCAGATTCAGATAGGCAACTGATAAAACTTGCTCAGGACTTGGTTACCAAGCATTTTGACGCCACTGAGCAATTTATCAGAAAACAGATTTGTGCGGCAGATCTTCTCCGTGTTTTTGGTAAGTTGTACAAGTTAGTGATATACTTCTATCCTATATCTCTTAAGAAAAGTTTTCTTCTGTTGCGTCTTTGTGCTGCAGGGAAGCTACCGACTTTAGACATTGGTCGGATTATATGGACAGATGTGCTTTTACTTGGGGAAGTATTGAATGATGCTGGTCTGCCTGATTATTCCTTGAAGGCTGCCCAGGTTGCTGTCAAACAGTACGTCACATGCACATTTTCTCGTCTCCTGCAAGACATCTCAGATGCACTCGCACAGGTTCATACTAGGAAAAAGGAGGAGGGCGTTCAAGAGTACTCCTTGCAGCTTGCACTGGAGGCCAGCAAGAAGGCTGTGCTTCAGGGCAGCATGGATGTTCTACTAGACTTCCGGCAGCTTCTTGAAGATCAGTCAGGGCTAACAATCAGCCAGAGGGACTCAATTGTTGATTGGGTTCAAGAAGGATTTCAGGACTTCTTCAGGGCACTTGTTGACCGGTTCATGTTGCTTTCAGGAAAAAATAGTTCTTTTAGCCAAAGTCAAGTTTTGCCTGAGGCAACTCAAGCTGAAAAAGTTGTTGCTGGGCTTGTCTTGGTTCTTGCTCAAGTTTCAGAAATAGCAGCTTCTTTTTCTGGTGGTGGTACAAGGGGTTATGAATATGGTCCTGCCTTTGTACCTGCCGAAATTTGCCGAATGTTTCGAGCTGCTGGTGAAAAGTTTCTGCACCTTTTAGAGGCTGTTGGAAGTGAAGTTAAACAGATTTTACCACAAGGGACGCGTAAGCATCGTCGGACTGACAGCAATGGAAGCACCACCTCATCACGGAGTAATCCACTCCGAGAGGAAAAGTTGAATAGATCTAATACGCAAAGAGCTCGGAGCCAGTTGTTGGAAACCCATCTAGCAAAGTTATTTAAGCAAAAGATAGAGATTTTTACTAGAGTAGAGTTTACTCAGGGATCTGTTGTAACAACTGCAGTGAAACTTTCCCTTAAAACTTTGCTAGAATTCGTCCGACTCCAGACTTTTAATCGAAGCGGGTTCCAGCAAGTTCAGTTAGATATGCAGTTCCTTAGGACTCCTCTGAAGGAAATTGCAGATGATGAAGCAGCTATTGACTTTTTGCTTGATGAGGTGATAGTTGCAGCATCAGAGCGTTGTCTGGACACCATTCCCTTGGAGCCTCCCATCTTAGACAAACTCATACAAGCAAAATTGGCAAAGGCAAAAGATCAGAATCCAACCTTTGGGGATGCACCTGTAAGAATTTATGTTCCAGAATTTCTTGTACCATATGTTACCAACAGATTTCTTGGCGCCCTCAGTAGTTATCATACAATGGAGTCTGCCGCTGTCTCCGATTCCTTAACGCCTCAAAACCCATATCTCACAGATGGCAACAGTCTGGTCTCCAGTAATGGATTATTCGAATTGGGTTTCTTCAGTCCTGGCCTGCCCAGCAACCGTTACTTGGGAATCTGGTACAAGGATCGACGAGGTCCGACCTCCGCTTGGGTCGCCAACAGGGGTACCCCTATTAATGACTCGTCTGGTGTACTGGCGATGAACATTACAACAGGTAATCTCACACTCTTCAGCCACAATTCCTCCATAGCTGTTTGGTCCGCAAGGTTACTGAGAAAAGTCCCCAATGGGGTACTCCAACTATTGGACACTGGAAATCTTGTGCTGCGGAATAGCGACGATGAAAACCCCCAAAACTACTCCTGGCAAAGCTTTGATTACCCTTCTGACACCCTCTTGCCTGGAATGAAGCTGGGTTGGGACTTGAAACATAACATAGAAAGAAGATTAGACGCTTGGAGGAATCCCAATGACCCGTCTCCTGGGGAATTCAATTGGAGGATGGAGCTTCATGCATATCCCGAGACCGTCATGTCCAAAGGTTCCCGGAAATACGTCAGGCATGGCCCATGGAATGGTGTGAGACTCTCTAGTAGACCCATAGCCGCAACCCCACTTCTGAATTTCAATTTTGTTGCAAATCAGGATGAGGTTTACTACCAATACTCTCTTATAAACAAGTCTCATGCAGTGATGTTGGTGATGAACCAATCCGATTACAAGCGCACCATGTATTTGTGGTCTGTACCTGAGAGACGGTGGAGAGTTTACTCTTCATTACCAAGAGATACATGTGACAATTATGCTATGTGTGGTCCTTTTGGATATTGTGATATAAGGGTCCCTCCTTTTTGTAAATGTCTTGAAGGGTTTAAGCCAAAATCACCTGACAGTTGGAAGGCAGGCGAATTCTCCGATGGTTGTGAACGAAACAAAGTGATGAATTGTGGTGATGAAATTGGGTTTTCAAAGCTCAACCGTATGAAATTACCAGACACAACGCATACTTGGGTCAACAGAAGCATGAACCTTGAAGAGTGCAAGCAAACATGCTTGAGAAATTGTTCTTGTATGGCTTATTCAAATACAGATATCAGTCACGGTGGCAGTGGCTGTGCTTTGTGGATTGGTGATCTAATTGACCTGAAATTGATCCCGGAGGCAGGAGGACAGGATTTATATGTCAGAATGCTAGCATCTGAATTAGTCAAGCTTAGGGAGTCGCACAAAACAGAGAGATTCAATCTTACGGTGAAGATTTCTTTGGCTGTGGTTGCCGCCGGTAGTTTGGCTATACTTTTCATATGCATATACATGTGCAAAAAGAGATCAACCATCAAAGATGATCATGAGAACATCGAAGCTCAAGACCTGGAGCTTCCCTTGTTTGATCTATCCTTGATAAATAGCGCCACAGATAACTTCTCGGTCAGTAATAAGCTAGGAGAAGGTGGCTTTGGGCCAGTTTATAAGGGTAAGCTTACAAGTGGACAAGAGATTGCAGTAAAGAGACTTTCACAGAGTTCTGGACAGGGAATGGATGAGTTTAAGAACGAAGTAATCCTGTTCGCAAAACTTCAACATCGAAATCTTGTAAAACTTCTTGGTTGCTGCATCGAAGGAGACGAGAAAATGCTAGTTTATGAGTATATGCCAAACAAAAGTTTGGACTTCTTTATATTTGATAAAACACAACGTGAATCATTAGACTGGTCACAACGATACCATATTATTTGTGGCATTGCTAGAGGACTCATGTACCTTCATCAAGATTCTAGATTGAGGATTATACATAGAGATTTAAAACCAAGTAATGTTTTACTTGATATGGATATGAATCCAAAAATCTCTGATTTCGGGCTGGCTAAAACTTGCGGTGAAGATCAAACCGAAGGAGAAACGAGAAGAGTGGTTGGAACTTACGGATATATGGCACCGGAATATGCATTTGATGGACAATTCTCAGTAAAATCTGATGCATTTAGCTATGGCATTTTGTTGCTGGAGATCATTAGTGGAAAAAGAAGTAGAGGTTTCTCTAACTTGAATGACCAAAATCTTGTTGCATATGCATGGCGACTGTGGAAAGAAGGAAATATTGAAGAATTAATCGACGATGCCGTTCGAGACACGTGCATCCTTTCGGGGGTATTCAGATGCGTCAATATCAGTTTGTTGTGTGTTCAACAAGAGCCTAACGATCGACCCACAATGTCATCGGTGGTTATGATGTTAGGGTGTGAAATTCCGTTGTTGCAACCGAAGCCACCAGGATTTTTCTTAGAAAATGAAGACATTGCAATGAAAAGTGTCACAGGTAAAGATGAATCAATTTCAACAAATGAATTGACTATTACCCTCCCAGATCCGAGGTAA 4713 42.12 MAAEIKNLDTDLQMLVYENYNKFISATDTIKRLIVMLMNNNIVGMETNMEQLLEKILSVQSRSDGVNTSLFEKREHIEKLHRTRNLLCKVQVPKIHCDGIVVLLEVTVDFIYDLPARLGKCIKTEAYADAVRFYTGAMPIFKVYGDSSFQDCKRASEEAIAIVLKNLQEKLFSDSESIQTRAEAAVLLKQLDFPVDSLKAKLLEKLEQSTLDLQLNAEDLSSALVIGSSKDGNVSESVYGASHEVGPLVVMENILSSLLLSFLFWSMECFCILASVREFAEAIRAYRVIFADSDRQLIKLAQDLVTKHFDATEQFIRKQICAADLLRVFGKLYKLVIYFYPISLKKSFLLLRLCAAGKLPTLDIGRIIWTDVLLLGEVLNDAGLPDYSLKAAQVAVKQYVTCTFSRLLQDISDALAQVHTRKKEEGVQEYSLQLALEASKKAVLQGSMDVLLDFRQLLEDQSGLTISQRDSIVDWVQEGFQDFFRALVDRFMLLSGKNSSFSQSQVLPEATQAEKVVAGLVLVLAQVSEIAASFSGGGTRGYEYGPAFVPAEICRMFRAAGEKFLHLLEAVGSEVKQILPQGTRKHRRTDSNGSTTSSRSNPLREEKLNRSNTQRARSQLLETHLAKLFKQKIEIFTRVEFTQGSVVTTAVKLSLKTLLEFVRLQTFNRSGFQQVQLDMQFLRTPLKEIADDEAAIDFLLDEVIVAASERCLDTIPLEPPILDKLIQAKLAKAKDQNPTFGDAPVRIYVPEFLVPYVTNRFLGALSSYHTMESAAVSDSLTPQNPYLTDGNSLVSSNGLFELGFFSPGLPSNRYLGIWYKDRRGPTSAWVANRGTPINDSSGVLAMNITTGNLTLFSHNSSIAVWSARLLRKVPNGVLQLLDTGNLVLRNSDDENPQNYSWQSFDYPSDTLLPGMKLGWDLKHNIERRLDAWRNPNDPSPGEFNWRMELHAYPETVMSKGSRKYVRHGPWNGVRLSSRPIAATPLLNFNFVANQDEVYYQYSLINKSHAVMLVMNQSDYKRTMYLWSVPERRWRVYSSLPRDTCDNYAMCGPFGYCDIRVPPFCKCLEGFKPKSPDSWKAGEFSDGCERNKVMNCGDEIGFSKLNRMKLPDTTHTWVNRSMNLEECKQTCLRNCSCMAYSNTDISHGGSGCALWIGDLIDLKLIPEAGGQDLYVRMLASELVKLRESHKTERFNLTVKISLAVVAAGSLAILFICIYMCKKRSTIKDDHENIEAQDLELPLFDLSLINSATDNFSVSNKLGEGGFGPVYKGKLTSGQEIAVKRLSQSSGQGMDEFKNEVILFAKLQHRNLVKLLGCCIEGDEKMLVYEYMPNKSLDFFIFDKTQRESLDWSQRYHIICGIARGLMYLHQDSRLRIIHRDLKPSNVLLDMDMNPKISDFGLAKTCGEDQTEGETRRVVGTYGYMAPEYAFDGQFSVKSDAFSYGILLLEIISGKRSRGFSNLNDQNLVAYAWRLWKEGNIEELIDDAVRDTCILSGVFRCVNISLLCVQQEPNDRPTMSSVVMMLGCEIPLLQPKPPGFFLENEDIAMKSVTGKDESISTNELTITLPDPR 1570
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
16 4644745 4665010 + CmoCh16G008700.1 Cmo16g00870 399905
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00870 1570 ProSiteProfiles Bulb-type lectin domain profile. 778 901 IPR001480 -
Cmo16g00870 1570 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1375 1387 IPR008271 GO:0004672|GO:0006468
Cmo16g00870 1570 Pfam S-locus glycoprotein domain 966 1074 IPR000858 GO:0048544
Cmo16g00870 1570 SMART serkin_6 1254 1524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00870 1570 SMART blect_4 784 907 IPR001480 -
Cmo16g00870 1570 MobiDBLite consensus disorder prediction 579 616 - -
Cmo16g00870 1570 Gene3D Hepatocyte Growth Factor 1092 1167 - -
Cmo16g00870 1570 Gene3D Phosphorylase Kinase; domain 1 1216 1329 - -
Cmo16g00870 1570 CDD STKc_IRAK 1260 1524 - -
Cmo16g00870 1570 SUPERFAMILY Protein kinase-like (PK-like) 1239 1547 IPR011009 -
Cmo16g00870 1570 Gene3D - 773 904 IPR036426 -
Cmo16g00870 1570 Coils Coil 203 223 - -
Cmo16g00870 1570 Gene3D Transferase(Phosphotransferase) domain 1 1330 1528 - -
Cmo16g00870 1570 SUPERFAMILY alpha-D-mannose-specific plant lectins 827 938 IPR036426 -
Cmo16g00870 1570 Pfam Vps51/Vps67 1 60 - -
Cmo16g00870 1570 Pfam Protein tyrosine and serine/threonine kinase 1256 1523 IPR001245 GO:0004672|GO:0006468
Cmo16g00870 1570 Pfam D-mannose binding lectin 826 933 IPR001480 -
Cmo16g00870 1570 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 777 1567 - -
Cmo16g00870 1570 SMART ntp_6 1096 1176 IPR003609 -
Cmo16g00870 1570 ProSiteProfiles PAN/Apple domain profile. 1095 1177 IPR003609 -
Cmo16g00870 1570 Coils Coil 35 55 - -
Cmo16g00870 1570 CDD PAN_AP_plant 1093 1175 - -
Cmo16g00870 1570 CDD B_lectin 786 907 IPR001480 -
Cmo16g00870 1570 Pfam PAN-like domain 1098 1161 IPR003609 -
Cmo16g00870 1570 PANTHER - 777 1567 - -
Cmo16g00870 1570 ProSiteProfiles Protein kinase domain profile. 1254 1531 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01224 Cmo-Chr1:9834744 Cmo16g00870 Cmo-Chr16:4644745 0 dispersed
Cmo09g00901 Cmo-Chr9:4698818 Cmo16g00870 Cmo-Chr16:4644745 0 dispersed
Cmo16g00870 Cmo-Chr16:4644745 Cmo18g00314 Cmo-Chr18:2010095 0 dispersed
Cmo16g00870 Cmo-Chr16:4644745 Cmo16g00871 Cmo-Chr16:4667379 0 tandem
Cmo01g00300 Cmo-Chr1:1427084 Cmo16g00870 Cmo-Chr16:4644745 0 transposed
Cmo13g00707 Cmo-Chr13:7177217 Cmo16g00870 Cmo-Chr16:4644745 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74972 PF07714 PK_Tyr_Ser-Thr 6.20E-49 CL0016 Cmo PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00870 - - cpep:111810431 1619.75