Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g00870 | ATGGCTGCTGAGATTAAGAATCTTGACACAGATCTACAAATGTTGGTTTATGAAAATTACAATAAGTTCATCAGTGCAACTGATACAATAAAAAGGTTAATAGTTATGTTGATGAATAATAATATCGTGGGGATGGAGACAAACATGGAACAACTACTTGAAAAAATACTGTCTGTGCAGTCTAGAAGTGATGGAGTTAATACTTCTCTCTTTGAAAAAAGAGAGCACATTGAGAAATTGCATCGAACACGAAACCTGCTTTGTAAAGTTCAGGTACCAAAAATACATTGTGATGGTATTGTTGTGCTTTTAGAAGTTACTGTAGATTTCATATATGATCTACCTGCTAGACTTGGAAAGTGCATCAAAACAGAAGCCTATGCTGATGCAGTCAGATTCTATACTGGTGCCATGCCAATATTTAAGGTGTATGGAGACTCCTCATTCCAAGATTGCAAGCGAGCATCAGAAGAAGCAATAGCAATAGTTTTGAAAAACTTGCAGGAAAAGCTATTCTCAGATTCTGAATCCATACAGACGAGAGCGGAGGCTGCAGTACTTCTTAAGCAGCTCGATTTCCCGGTGGACAGTTTAAAGGCAAAGTTGCTAGAAAAGTTGGAACAATCAACATTGGATCTTCAGCTTAATGCTGAGGATTTGAGTAGTGCATTAGTGATTGGCTCTTCAAAAGATGGAAATGTTTCTGAGTCAGTTTATGGTGCTTCACATGAGGTGGGTCCATTGGTTGTCATGGAGAATATCTTATCTTCCCTTTTGCTTTCATTTCTTTTTTGGAGTATGGAATGTTTCTGTATCTTAGCATCTGTTCGGGAGTTTGCAGAGGCAATCCGAGCTTATCGTGTAATATTTGCAGATTCAGATAGGCAACTGATAAAACTTGCTCAGGACTTGGTTACCAAGCATTTTGACGCCACTGAGCAATTTATCAGAAAACAGATTTGTGCGGCAGATCTTCTCCGTGTTTTTGGTAAGTTGTACAAGTTAGTGATATACTTCTATCCTATATCTCTTAAGAAAAGTTTTCTTCTGTTGCGTCTTTGTGCTGCAGGGAAGCTACCGACTTTAGACATTGGTCGGATTATATGGACAGATGTGCTTTTACTTGGGGAAGTATTGAATGATGCTGGTCTGCCTGATTATTCCTTGAAGGCTGCCCAGGTTGCTGTCAAACAGTACGTCACATGCACATTTTCTCGTCTCCTGCAAGACATCTCAGATGCACTCGCACAGGTTCATACTAGGAAAAAGGAGGAGGGCGTTCAAGAGTACTCCTTGCAGCTTGCACTGGAGGCCAGCAAGAAGGCTGTGCTTCAGGGCAGCATGGATGTTCTACTAGACTTCCGGCAGCTTCTTGAAGATCAGTCAGGGCTAACAATCAGCCAGAGGGACTCAATTGTTGATTGGGTTCAAGAAGGATTTCAGGACTTCTTCAGGGCACTTGTTGACCGGTTCATGTTGCTTTCAGGAAAAAATAGTTCTTTTAGCCAAAGTCAAGTTTTGCCTGAGGCAACTCAAGCTGAAAAAGTTGTTGCTGGGCTTGTCTTGGTTCTTGCTCAAGTTTCAGAAATAGCAGCTTCTTTTTCTGGTGGTGGTACAAGGGGTTATGAATATGGTCCTGCCTTTGTACCTGCCGAAATTTGCCGAATGTTTCGAGCTGCTGGTGAAAAGTTTCTGCACCTTTTAGAGGCTGTTGGAAGTGAAGTTAAACAGATTTTACCACAAGGGACGCGTAAGCATCGTCGGACTGACAGCAATGGAAGCACCACCTCATCACGGAGTAATCCACTCCGAGAGGAAAAGTTGAATAGATCTAATACGCAAAGAGCTCGGAGCCAGTTGTTGGAAACCCATCTAGCAAAGTTATTTAAGCAAAAGATAGAGATTTTTACTAGAGTAGAGTTTACTCAGGGATCTGTTGTAACAACTGCAGTGAAACTTTCCCTTAAAACTTTGCTAGAATTCGTCCGACTCCAGACTTTTAATCGAAGCGGGTTCCAGCAAGTTCAGTTAGATATGCAGTTCCTTAGGACTCCTCTGAAGGAAATTGCAGATGATGAAGCAGCTATTGACTTTTTGCTTGATGAGGTGATAGTTGCAGCATCAGAGCGTTGTCTGGACACCATTCCCTTGGAGCCTCCCATCTTAGACAAACTCATACAAGCAAAATTGGCAAAGGCAAAAGATCAGAATCCAACCTTTGGGGATGCACCTGTAAGAATTTATGTTCCAGAATTTCTTGTACCATATGTTACCAACAGATTTCTTGGCGCCCTCAGTAGTTATCATACAATGGAGTCTGCCGCTGTCTCCGATTCCTTAACGCCTCAAAACCCATATCTCACAGATGGCAACAGTCTGGTCTCCAGTAATGGATTATTCGAATTGGGTTTCTTCAGTCCTGGCCTGCCCAGCAACCGTTACTTGGGAATCTGGTACAAGGATCGACGAGGTCCGACCTCCGCTTGGGTCGCCAACAGGGGTACCCCTATTAATGACTCGTCTGGTGTACTGGCGATGAACATTACAACAGGTAATCTCACACTCTTCAGCCACAATTCCTCCATAGCTGTTTGGTCCGCAAGGTTACTGAGAAAAGTCCCCAATGGGGTACTCCAACTATTGGACACTGGAAATCTTGTGCTGCGGAATAGCGACGATGAAAACCCCCAAAACTACTCCTGGCAAAGCTTTGATTACCCTTCTGACACCCTCTTGCCTGGAATGAAGCTGGGTTGGGACTTGAAACATAACATAGAAAGAAGATTAGACGCTTGGAGGAATCCCAATGACCCGTCTCCTGGGGAATTCAATTGGAGGATGGAGCTTCATGCATATCCCGAGACCGTCATGTCCAAAGGTTCCCGGAAATACGTCAGGCATGGCCCATGGAATGGTGTGAGACTCTCTAGTAGACCCATAGCCGCAACCCCACTTCTGAATTTCAATTTTGTTGCAAATCAGGATGAGGTTTACTACCAATACTCTCTTATAAACAAGTCTCATGCAGTGATGTTGGTGATGAACCAATCCGATTACAAGCGCACCATGTATTTGTGGTCTGTACCTGAGAGACGGTGGAGAGTTTACTCTTCATTACCAAGAGATACATGTGACAATTATGCTATGTGTGGTCCTTTTGGATATTGTGATATAAGGGTCCCTCCTTTTTGTAAATGTCTTGAAGGGTTTAAGCCAAAATCACCTGACAGTTGGAAGGCAGGCGAATTCTCCGATGGTTGTGAACGAAACAAAGTGATGAATTGTGGTGATGAAATTGGGTTTTCAAAGCTCAACCGTATGAAATTACCAGACACAACGCATACTTGGGTCAACAGAAGCATGAACCTTGAAGAGTGCAAGCAAACATGCTTGAGAAATTGTTCTTGTATGGCTTATTCAAATACAGATATCAGTCACGGTGGCAGTGGCTGTGCTTTGTGGATTGGTGATCTAATTGACCTGAAATTGATCCCGGAGGCAGGAGGACAGGATTTATATGTCAGAATGCTAGCATCTGAATTAGTCAAGCTTAGGGAGTCGCACAAAACAGAGAGATTCAATCTTACGGTGAAGATTTCTTTGGCTGTGGTTGCCGCCGGTAGTTTGGCTATACTTTTCATATGCATATACATGTGCAAAAAGAGATCAACCATCAAAGATGATCATGAGAACATCGAAGCTCAAGACCTGGAGCTTCCCTTGTTTGATCTATCCTTGATAAATAGCGCCACAGATAACTTCTCGGTCAGTAATAAGCTAGGAGAAGGTGGCTTTGGGCCAGTTTATAAGGGTAAGCTTACAAGTGGACAAGAGATTGCAGTAAAGAGACTTTCACAGAGTTCTGGACAGGGAATGGATGAGTTTAAGAACGAAGTAATCCTGTTCGCAAAACTTCAACATCGAAATCTTGTAAAACTTCTTGGTTGCTGCATCGAAGGAGACGAGAAAATGCTAGTTTATGAGTATATGCCAAACAAAAGTTTGGACTTCTTTATATTTGATAAAACACAACGTGAATCATTAGACTGGTCACAACGATACCATATTATTTGTGGCATTGCTAGAGGACTCATGTACCTTCATCAAGATTCTAGATTGAGGATTATACATAGAGATTTAAAACCAAGTAATGTTTTACTTGATATGGATATGAATCCAAAAATCTCTGATTTCGGGCTGGCTAAAACTTGCGGTGAAGATCAAACCGAAGGAGAAACGAGAAGAGTGGTTGGAACTTACGGATATATGGCACCGGAATATGCATTTGATGGACAATTCTCAGTAAAATCTGATGCATTTAGCTATGGCATTTTGTTGCTGGAGATCATTAGTGGAAAAAGAAGTAGAGGTTTCTCTAACTTGAATGACCAAAATCTTGTTGCATATGCATGGCGACTGTGGAAAGAAGGAAATATTGAAGAATTAATCGACGATGCCGTTCGAGACACGTGCATCCTTTCGGGGGTATTCAGATGCGTCAATATCAGTTTGTTGTGTGTTCAACAAGAGCCTAACGATCGACCCACAATGTCATCGGTGGTTATGATGTTAGGGTGTGAAATTCCGTTGTTGCAACCGAAGCCACCAGGATTTTTCTTAGAAAATGAAGACATTGCAATGAAAAGTGTCACAGGTAAAGATGAATCAATTTCAACAAATGAATTGACTATTACCCTCCCAGATCCGAGGTAA | 4713 | 42.12 | MAAEIKNLDTDLQMLVYENYNKFISATDTIKRLIVMLMNNNIVGMETNMEQLLEKILSVQSRSDGVNTSLFEKREHIEKLHRTRNLLCKVQVPKIHCDGIVVLLEVTVDFIYDLPARLGKCIKTEAYADAVRFYTGAMPIFKVYGDSSFQDCKRASEEAIAIVLKNLQEKLFSDSESIQTRAEAAVLLKQLDFPVDSLKAKLLEKLEQSTLDLQLNAEDLSSALVIGSSKDGNVSESVYGASHEVGPLVVMENILSSLLLSFLFWSMECFCILASVREFAEAIRAYRVIFADSDRQLIKLAQDLVTKHFDATEQFIRKQICAADLLRVFGKLYKLVIYFYPISLKKSFLLLRLCAAGKLPTLDIGRIIWTDVLLLGEVLNDAGLPDYSLKAAQVAVKQYVTCTFSRLLQDISDALAQVHTRKKEEGVQEYSLQLALEASKKAVLQGSMDVLLDFRQLLEDQSGLTISQRDSIVDWVQEGFQDFFRALVDRFMLLSGKNSSFSQSQVLPEATQAEKVVAGLVLVLAQVSEIAASFSGGGTRGYEYGPAFVPAEICRMFRAAGEKFLHLLEAVGSEVKQILPQGTRKHRRTDSNGSTTSSRSNPLREEKLNRSNTQRARSQLLETHLAKLFKQKIEIFTRVEFTQGSVVTTAVKLSLKTLLEFVRLQTFNRSGFQQVQLDMQFLRTPLKEIADDEAAIDFLLDEVIVAASERCLDTIPLEPPILDKLIQAKLAKAKDQNPTFGDAPVRIYVPEFLVPYVTNRFLGALSSYHTMESAAVSDSLTPQNPYLTDGNSLVSSNGLFELGFFSPGLPSNRYLGIWYKDRRGPTSAWVANRGTPINDSSGVLAMNITTGNLTLFSHNSSIAVWSARLLRKVPNGVLQLLDTGNLVLRNSDDENPQNYSWQSFDYPSDTLLPGMKLGWDLKHNIERRLDAWRNPNDPSPGEFNWRMELHAYPETVMSKGSRKYVRHGPWNGVRLSSRPIAATPLLNFNFVANQDEVYYQYSLINKSHAVMLVMNQSDYKRTMYLWSVPERRWRVYSSLPRDTCDNYAMCGPFGYCDIRVPPFCKCLEGFKPKSPDSWKAGEFSDGCERNKVMNCGDEIGFSKLNRMKLPDTTHTWVNRSMNLEECKQTCLRNCSCMAYSNTDISHGGSGCALWIGDLIDLKLIPEAGGQDLYVRMLASELVKLRESHKTERFNLTVKISLAVVAAGSLAILFICIYMCKKRSTIKDDHENIEAQDLELPLFDLSLINSATDNFSVSNKLGEGGFGPVYKGKLTSGQEIAVKRLSQSSGQGMDEFKNEVILFAKLQHRNLVKLLGCCIEGDEKMLVYEYMPNKSLDFFIFDKTQRESLDWSQRYHIICGIARGLMYLHQDSRLRIIHRDLKPSNVLLDMDMNPKISDFGLAKTCGEDQTEGETRRVVGTYGYMAPEYAFDGQFSVKSDAFSYGILLLEIISGKRSRGFSNLNDQNLVAYAWRLWKEGNIEELIDDAVRDTCILSGVFRCVNISLLCVQQEPNDRPTMSSVVMMLGCEIPLLQPKPPGFFLENEDIAMKSVTGKDESISTNELTITLPDPR | 1570 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 4644745 | 4665010 | + | CmoCh16G008700.1 | Cmo16g00870 | 399905 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g00870 | 1570 | ProSiteProfiles | Bulb-type lectin domain profile. | 778 | 901 | IPR001480 | - | |
Cmo16g00870 | 1570 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1375 | 1387 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo16g00870 | 1570 | Pfam | S-locus glycoprotein domain | 966 | 1074 | IPR000858 | GO:0048544 | |
Cmo16g00870 | 1570 | SMART | serkin_6 | 1254 | 1524 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo16g00870 | 1570 | SMART | blect_4 | 784 | 907 | IPR001480 | - | |
Cmo16g00870 | 1570 | MobiDBLite | consensus disorder prediction | 579 | 616 | - | - | |
Cmo16g00870 | 1570 | Gene3D | Hepatocyte Growth Factor | 1092 | 1167 | - | - | |
Cmo16g00870 | 1570 | Gene3D | Phosphorylase Kinase; domain 1 | 1216 | 1329 | - | - | |
Cmo16g00870 | 1570 | CDD | STKc_IRAK | 1260 | 1524 | - | - | |
Cmo16g00870 | 1570 | SUPERFAMILY | Protein kinase-like (PK-like) | 1239 | 1547 | IPR011009 | - | |
Cmo16g00870 | 1570 | Gene3D | - | 773 | 904 | IPR036426 | - | |
Cmo16g00870 | 1570 | Coils | Coil | 203 | 223 | - | - | |
Cmo16g00870 | 1570 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1330 | 1528 | - | - | |
Cmo16g00870 | 1570 | SUPERFAMILY | alpha-D-mannose-specific plant lectins | 827 | 938 | IPR036426 | - | |
Cmo16g00870 | 1570 | Pfam | Vps51/Vps67 | 1 | 60 | - | - | |
Cmo16g00870 | 1570 | Pfam | Protein tyrosine and serine/threonine kinase | 1256 | 1523 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo16g00870 | 1570 | Pfam | D-mannose binding lectin | 826 | 933 | IPR001480 | - | |
Cmo16g00870 | 1570 | PANTHER | RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 | 777 | 1567 | - | - | |
Cmo16g00870 | 1570 | SMART | ntp_6 | 1096 | 1176 | IPR003609 | - | |
Cmo16g00870 | 1570 | ProSiteProfiles | PAN/Apple domain profile. | 1095 | 1177 | IPR003609 | - | |
Cmo16g00870 | 1570 | Coils | Coil | 35 | 55 | - | - | |
Cmo16g00870 | 1570 | CDD | PAN_AP_plant | 1093 | 1175 | - | - | |
Cmo16g00870 | 1570 | CDD | B_lectin | 786 | 907 | IPR001480 | - | |
Cmo16g00870 | 1570 | Pfam | PAN-like domain | 1098 | 1161 | IPR003609 | - | |
Cmo16g00870 | 1570 | PANTHER | - | 777 | 1567 | - | - | |
Cmo16g00870 | 1570 | ProSiteProfiles | Protein kinase domain profile. | 1254 | 1531 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01224 | Cmo-Chr1:9834744 | Cmo16g00870 | Cmo-Chr16:4644745 | 0 | dispersed | |
Cmo09g00901 | Cmo-Chr9:4698818 | Cmo16g00870 | Cmo-Chr16:4644745 | 0 | dispersed | |
Cmo16g00870 | Cmo-Chr16:4644745 | Cmo18g00314 | Cmo-Chr18:2010095 | 0 | dispersed | |
Cmo16g00870 | Cmo-Chr16:4644745 | Cmo16g00871 | Cmo-Chr16:4667379 | 0 | tandem | |
Cmo01g00300 | Cmo-Chr1:1427084 | Cmo16g00870 | Cmo-Chr16:4644745 | 0 | transposed | |
Cmo13g00707 | Cmo-Chr13:7177217 | Cmo16g00870 | Cmo-Chr16:4644745 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74972 | PF07714 | PK_Tyr_Ser-Thr | 6.20E-49 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g00870 | - | - | cpep:111810431 | 1619.75 |