Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00871 ATGTGGACATTTATTGGCCTGTCCATTCCCACTTATAATGCCCACAATTCAAGTGGTCAGGGTACACAGGCCCACAGCCGCCGCCACAACGACCAAATCTACTCAGAGGAGCCGTTCAATTTCCTCCTTGTTGATGCCCCCATTGTCAAGGCAGAAGAAAAATCAGTCAGTCATCCTCAACCCCAATCGGATAATGCCGTCTGTCGCTCCATCGATATGGGCTCTTTATCTCCACCAATCCTGGTCTTTAACTTGGTCTTTTATCTCTTCACCTCTGCCGTTGCCACTGATTCCTTGACTGCTCAAAACCCATATCTCAGAGATGGGTATACTCTGGTCTCCAGAAATGGAATCTTCGAATTGGGTTTCTTCACTCCTGGTGTTTCGGGCCATCGTTATTTGGGAATTTGGTTTAAGAATCGCCGAGGTCCGACCTCCGTTTGGGTGGCGAACAGGAAAGCCCCAATTAATGATTCATCTGGTGTGCTGGTGATGAATCTTACAACAGGTAATCTGGCGCTCACTACCCACAATTCCACCGCCGTTGTTTGGTCCGCAAGGTTACTGAGAAAAGTCCCCAATGGGGTACTCCAACTATTGGACACTGGAAATCTTGCGCTGCGGAATACCGACGATGAAAATCCCCAAAATTACTCCTGGCAAAGCTTTGTTTCAAATAAGGATGAAGTTTACTACCAATATGCTGTTGTAAATAAGTCTCATACAGTGATGGCGGTGATGAACCAATCCGATTACAGCCGCGCCATGTATTTGTGGTCTACAGCTGAGAGTCGGTGGACAGTTCACACTTCATCACCAAGAGATTTCTGTGACAATTATGCCATGTGTGGCCCCTTTGGATATTGTGATGTAAGGGTAACTCCATCTTGTAAATGTATTGAAGGGTTTAAGCCAAAATCACCTGATAGTTGGAAGGCAGGGGAATTTGCGGATGGTTGTGAACGAATCAAAGTGATGAATTGTGGTGATGAAGTTGGGTTTGCACCGCTCAACCAGATGAAATTACCAGACACAACGCATGCTTCGATGAACAGAAGCATGAATCTTGAAGAGTGCAAGCAACAATGCTTGAGAAATTGTTCTTGTATGGCTTATGCTAATACAAATATCAGTGGCGGTGGCAGCGGCAGTGGCTGTGGCCTATGGATTGGTAATCTAATTGACTTGAAGTTGATCCCGGATGCAGGACAGGATTTATATATCAGAAGGCTAGCATCGGATTTAGTCAAGCTTAGGGAGCCACGCAAAACTGGTGGATTGAGTCCTAAGCTGAAGATTGCTTTGGTTGTGATTGCTGCCGGCTTAGGTTTGGCTATCATCTTCATATGCTTATACGTTTTCAAAAGGAGATCAACCTTCAAAGATGATCATGACAAAATAGAAGGTGAAGACCTGGAGCTTCCCTTGTTTGATCTATCCTTGATAAATAGCGCCACAGATAACTTCTCGGTCAGTAATAAGCTAGGAGAAGGTGGCTTTGGGCCAGTTTATAAGGGTAAGCTTCCAAATGGACAAGAGATTGCAGTAAAGAGACTTTCACAGAGTTCTGGACAGGGAATGAATGAGTTTAAGAACGAAGTAATCCTTATTGCAAAACTTCAACATCGAAATCTTGTAAAGCTTCTTGGTTGCTGCATTCAAGGAGACGAGAAAATGCTAGTTTATGAGTATATGCCAAACAGAAGTTTGGACTTGTTTATATTTGATCGAACACAACGTCAATTATTAGTCTGGCCACAACGATACCATATTATTTGTGGCATTGCCAGAGGACTCACGTATCTTCATCAAGATTCTAGATTGAGGATTATACATAGAGATTTAAAGCCAAGTAATGTTTTACTTGATATGGATATGAATCCAAAAATCTCTGATTTTGGGCTGGCTAAAACATGCGGTGAAGATCAAACCGAAGGACGAACGAAAAGAGTGGTTGGAACTTACGGATATATGGCACCCGAATACGCTTTTGATGGACAATTCTCAGTAAAATCTGATGCATTTAGCTATGGCATTTTGTTGTTGGAGATCATTAGTGGAACAAAAAGCAGAGGTTTCTGCCACTTGAATGCGCAAAATCTTATTGCATATGCATGGCGTTTGTGGAAAGAAGGGAATCCCGAAGAGTTGATCGACGAAGCCATTCGAGAAACGTGCATCATTTCGGAGGTATTGAGATGTATCAATATCAGTTTGTTGTGTGTTCAACAACGTCCTAACGATCGACCGACAATGTCATCGGTCGTTATGATGTTAGGGTGTGAAATTCGTTTGTCGCAACCGAAACAACCTGGCTTTTTCGTACAAAATGAAGCTATGGGAATGAAAGGTGACTCGAGTAAAGAAAAATCAACTTCAGCTAATCAAATTTCTATTTCATTCCCAGATCCAAGGTAA 2418 42.89 MWTFIGLSIPTYNAHNSSGQGTQAHSRRHNDQIYSEEPFNFLLVDAPIVKAEEKSVSHPQPQSDNAVCRSIDMGSLSPPILVFNLVFYLFTSAVATDSLTAQNPYLRDGYTLVSRNGIFELGFFTPGVSGHRYLGIWFKNRRGPTSVWVANRKAPINDSSGVLVMNLTTGNLALTTHNSTAVVWSARLLRKVPNGVLQLLDTGNLALRNTDDENPQNYSWQSFVSNKDEVYYQYAVVNKSHTVMAVMNQSDYSRAMYLWSTAESRWTVHTSSPRDFCDNYAMCGPFGYCDVRVTPSCKCIEGFKPKSPDSWKAGEFADGCERIKVMNCGDEVGFAPLNQMKLPDTTHASMNRSMNLEECKQQCLRNCSCMAYANTNISGGGSGSGCGLWIGNLIDLKLIPDAGQDLYIRRLASDLVKLREPRKTGGLSPKLKIALVVIAAGLGLAIIFICLYVFKRRSTFKDDHDKIEGEDLELPLFDLSLINSATDNFSVSNKLGEGGFGPVYKGKLPNGQEIAVKRLSQSSGQGMNEFKNEVILIAKLQHRNLVKLLGCCIQGDEKMLVYEYMPNRSLDLFIFDRTQRQLLVWPQRYHIICGIARGLTYLHQDSRLRIIHRDLKPSNVLLDMDMNPKISDFGLAKTCGEDQTEGRTKRVVGTYGYMAPEYAFDGQFSVKSDAFSYGILLLEIISGTKSRGFCHLNAQNLIAYAWRLWKEGNPEELIDEAIRETCIISEVLRCINISLLCVQQRPNDRPTMSSVVMMLGCEIRLSQPKQPGFFVQNEAMGMKGDSSKEKSTSANQISISFPDPR 805
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4667379 4671169 + CmoCh16G008710.1 Cmo16g00871 399906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00871 805 Gene3D Transferase(Phosphotransferase) domain 1 565 770 - -
Cmo16g00871 805 SMART blect_4 103 226 IPR001480 -
Cmo16g00871 805 ProSiteProfiles Protein kinase domain profile. 489 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00871 805 Gene3D - 91 225 IPR036426 -
Cmo16g00871 805 CDD STKc_IRAK 495 759 - -
Cmo16g00871 805 PANTHER - 222 802 - -
Cmo16g00871 805 PIRSF SRK 70 228 IPR024171 GO:0004674
Cmo16g00871 805 PIRSF SRK 223 805 IPR024171 GO:0004674
Cmo16g00871 805 ProSiteProfiles Bulb-type lectin domain profile. 97 220 IPR001480 -
Cmo16g00871 805 Pfam PAN-like domain 329 396 IPR003609 -
Cmo16g00871 805 Pfam D-mannose binding lectin 145 236 IPR001480 -
Cmo16g00871 805 MobiDBLite consensus disorder prediction 783 805 - -
Cmo16g00871 805 SUPERFAMILY Protein kinase-like (PK-like) 472 758 IPR011009 -
Cmo16g00871 805 MobiDBLite consensus disorder prediction 786 805 - -
Cmo16g00871 805 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 222 802 - -
Cmo16g00871 805 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 96 223 - -
Cmo16g00871 805 Gene3D Phosphorylase Kinase; domain 1 453 564 - -
Cmo16g00871 805 SMART serkin_6 489 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00871 805 Pfam Protein tyrosine and serine/threonine kinase 491 758 IPR001245 GO:0004672|GO:0006468
Cmo16g00871 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 610 622 IPR008271 GO:0004672|GO:0006468
Cmo16g00871 805 SUPERFAMILY alpha-D-mannose-specific plant lectins 132 239 IPR036426 -
Cmo16g00871 805 ProSiteProfiles PAN/Apple domain profile. 328 411 IPR003609 -
Cmo16g00871 805 PANTHER - 96 223 - -
Cmo16g00871 805 CDD PAN_AP_plant 326 409 - -
Cmo16g00871 805 Pfam S-locus glycoprotein domain 215 307 IPR000858 GO:0048544
Cmo16g00871 805 SMART ntp_6 329 410 IPR003609 -
Cmo16g00871 805 CDD B_lectin 105 223 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00871 Cmo-Chr16:4667379 Cmo18g00314 Cmo-Chr18:2010095 5.64E-16 dispersed
Cmo16g00870 Cmo-Chr16:4644745 Cmo16g00871 Cmo-Chr16:4667379 0 tandem
Cmo13g00708 Cmo-Chr13:7182329 Cmo16g00871 Cmo-Chr16:4667379 8.67E-174 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74973 PF07714 PK_Tyr_Ser-Thr 1.90E-48 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00871 - - cpep:111810431 1434.08