Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00873 ATGCCAACAGTTTGGGTGTCCTTGAAGAAATCTTTGTACTGCAAATCAGACCCATCAGAAGTCCATGACCCAAAAACCAGAAAGAATTTGGGTTCAATTTTGACCAGAAAAACAGGGGGAGGAGGCAGATCAGGTTGTTCAAGGTCCATAGCAAATCTCAAAGACGTCATCCATGGCGGCACCAGCAAGAGGCATTTCGACAAGCCCCCAAGTTGCAGTCCAAGATCCATTGGCAGCAGCGACTTTCTCAACCCAATAACCCACCAAGTCATTCTCAACAACTCTAGATGCGAGCTCAAAATCACCGGTTTCCATACCGGTTTCCCCCAAGATGTACCTGCCGCCGATCCTCACGCCGGTGCTAACACCGCTTCCACCTTCGTCGGCACTCTGACACCAGGCACACCCGGCCCCGGTGCCTACCCATTGAGGCCTTCTTCGAGAAAGTTCCCATTAAGAGACGGATTCGGAAGCTCTCATAAATCTGGCGGCGGCGGAGTGAGGAACAGAGTCTCTTTGAAAACAGAGGATATTGGGAATGGGTTTTGTTCGACGGTTACTTGCCATAAATGTGGCGAGCAGTTCAACAAATGGGATTCTGCTGAAGCACATCATCTTTCAAATCATGCTGTAACAGAGCTTGTGGAAGGAGATTCATCAAGGAAAATCGTGGAGATAATATGCAGAACAAGCTGGTTAAAATCAGAGAATCAAAGTGGCAGAATAGAAAGAGTGGTGAAAGTTCACAATATGCAACGAACACTAGCCCGATTCGAGGAGTATCGTGAGACAGTCAAAATGAAAGCCAGCAAGCTCCCAAAGAAGCACCCACGGTGCATTGCAGACGGGAACGAGCTGCTGCGATTCTACGGCACGACGGTCGCGTGCTCACTTGGCCTCAATGGCTCCTCCAGCCTCTGCATATCGGAGAAATGCTGCGTGTGCAGAATCATACGCAATGGGTTCTCAGCAAAGACAGAGATGAAAGAAGGGATAGGCGTGTTCACAACTTCTACGAGTGCAAGAGCATTCAGCTCGATTGAGATGTCGGGATGGGACGAGGCGATAACGAGGAAGGCGATGATTGTATGCAGGGTGATTGCAGGGAGAGTTCATAGGCCATTGGAGAACATACAGGAAATGGCTGGACAGACGGGGTTTGATTCATTGGCGGGGAAAGTTGGGTTGCATTCAAATATAGAAGAGCTTTATTTGTTGAATCCTAGAGCTTTGCTTCCATGTTTTGTGGTAATTTGCAAAGCATGA 1266 48.5 MPTVWVSLKKSLYCKSDPSEVHDPKTRKNLGSILTRKTGGGGRSGCSRSIANLKDVIHGGTSKRHFDKPPSCSPRSIGSSDFLNPITHQVILNNSRCELKITGFHTGFPQDVPAADPHAGANTASTFVGTLTPGTPGPGAYPLRPSSRKFPLRDGFGSSHKSGGGGVRNRVSLKTEDIGNGFCSTVTCHKCGEQFNKWDSAEAHHLSNHAVTELVEGDSSRKIVEIICRTSWLKSENQSGRIERVVKVHNMQRTLARFEEYRETVKMKASKLPKKHPRCIADGNELLRFYGTTVACSLGLNGSSSLCISEKCCVCRIIRNGFSAKTEMKEGIGVFTTSTSARAFSSIEMSGWDEAITRKAMIVCRVIAGRVHRPLENIQEMAGQTGFDSLAGKVGLHSNIEELYLLNPRALLPCFVVICKA 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 4681672 4683520 + CmoCh16G008730.1 Cmo16g00873 399908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00873 421 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 2 421 - -
Cmo16g00873 421 Gene3D - 211 420 - -
Cmo16g00873 421 MobiDBLite consensus disorder prediction 18 45 - -
Cmo16g00873 421 PANTHER - 2 421 - -
Cmo16g00873 421 SUPERFAMILY ADP-ribosylation 211 420 - -
Cmo16g00873 421 ProSitePatterns Zinc finger C2H2 type domain signature. 188 209 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00531 Cmo-Chr3:5429382 Cmo16g00873 Cmo-Chr16:4681672 3.14E-07 dispersed
Cmo09g00914 Cmo-Chr9:4781899 Cmo16g00873 Cmo-Chr16:4681672 5.98E-177 dispersed
Cmo15g00715 Cmo-Chr15:3476055 Cmo16g00873 Cmo-Chr16:4681672 3.47E-76 dispersed
Cmo16g00873 Cmo-Chr16:4681672 Cmo20g00383 Cmo-Chr20:1870489 4.82E-52 dispersed
Cmo16g00873 Cmo-Chr16:4681672 Cmo01g01211 Cmo-Chr1:9781096 2.77E-178 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11311 None None None None Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00873 - - csv:101208986 692.575