Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00894 ATGACGAAGGTATCTCCCAAGAAGCCTCAGCTTCCGGCGCCTTTTCCGCCCACACTCAACCAACTCCCAGATTTGGATCTGCATTACAGGCCTGGTTCCAGTCGGCCTACGCGGCGGAGAATCCGAAGTCCAGCCCGTGTTAGAAGAGTTGTTGCTCCCCTTGGGAAGCGGAGCCGGCCTGAGACGCCCTTGCTCAAGTGGAAAATCGACGACGCGGGGAGTGGAGCTAATGGAGTTCAGCAGGAGGAAGATGAGAAGAGATTGCCTCTGGAAAGCAGCCAGAGAGGTCGCATTCGAGGTTGTAAAGGAAGAAAAGTCGTTGTTTCGGCCAGGAAGCTCGCGGCTGGAATTTGGAGATTGCTGCTGCAGGAGGCGGCCGCTAGTGAAGGGAGGAATGGTGGCCAGGGAAGGACGGAGGATCTCGTAGGGTTTCAGACAAATTTGCATTTAAAGGTTCATCACCAATCTCATTGTTATTCTAACTACAAAAACATTGATTTTGATTTTGGAGAGCCTCGCACGGGTCATTTGGCTCCAGCTCTCCATCCTGATGAGAAGATAGCATTTAATTCTGAAATGAATGATCTATTACATAGTCCCCATTCTGTCTCTGATTCGAGAAATCGACTATTGTGCAAGTTTGAGCCCTCATTTCGATATTCGAACTCAGCAATGGAGGGGGCAACCAAGTGGGAACCTGCATGCTTGAAAACTCCAGTTGAGGCACGTCAAATTTACAACCAAATGAGACTTCTTGATCAGCATGGTGCTGTTTTGGCCCTTTCTGCGCTTGAATCTGAACTAGAGCAAGCCCACTTGCAGATCGAGGAACTTCAAGCTGAGCGTAATGCTTCGAAAAAGAAGCTCGAATACTTCTTGAGGAAAGTTGCTGAAGAAAAAACCTTATGGCGGAGCAGAGAGCATGAGAAAATAAGGGCATGTGTTGATGATATAAAGGCTGAGTTGAACAGAGAAAAGAAAACCCGACAAAGGGTGGAAATGATCAATTCAAAATTGGTAAATGAGTTGGCCGATGCTAAGCTATCTGTAAAGCGGTTTATGCAAGACTATGAAAAAGAAAGAAAGGAAAGATCCTTGGTTGAGGAAGTATGTGATGAACTTGCAAAGGAAGTTGGTGAAGACAAAGCAAGAATAGAAGCTCTGAAGAGAGAATCCATGAAATTGAGAGATGAAGCAGATGAAGAACGGAGAATGTTACAGATGGCGGAGGTATGGCGCGAAGAACGTGTTCAAATGAAGCTGGTTGATGCCAAGGTGGCACTTGAAGAGAAATACTCACAGATGCGTAATCTAGTAGCAGACCTTGAAGACTTCTTAAGGTTGAAAAGTGAAACCCCAGATGTATCAGAGATGAAAAAAGCTTTGCTACTTAGAGAGGCTGCCGCCTCTGTTAATATTCAAGATGTCACAGAATTTGTTTATGAACCTTCAAACCCAGATGATATCTTCTCTGTGTTTGAAGATGTCAATTTTGGAGAATCGAATGAGAGGGAAATTGGACAGTGCGATGCTTACAGCCCGCCTTGTCACGCTTCTAAAGTCGAGACTGCGAGTCTAGAAGCTAATGTTACCGATAGGATCGGCATTCAGAGACATACGGATTCCTTTGTTGCTCGTAACAGCGGTATAGAAGAAGATGAGAGTGGCTGGGAAACTGTGAGTCATTTAGAGGATCAGGGCTCAAGCAATTCCCCAGAACAGAGTGTTGCGTCTATCAAAAAGAATCATCGGGAGAGTAATGCTTCCGTGAGTGGGATAGAATGGGAAGGAAATGGAGGTGGAGACTCACCCCTTACTGAAATCAGTGAAGTCTGCTCAGTTCCATCAAAGCAATTAAAGAAGATATCATCCATTGCACGGCTTTGGAAATCGTGCTCAAACAATGAAGGATACAAACTAATCTCCCTTGAGGGCATAAACGCCAGGCTCTCAAATGGAAGATTATCGAGTGCAAGTATCTTTTCGGCAGATGGGGGCTCGGTGAGAAGCGGGATTAGTCCTCCAGAATTGGCTGGACAGTGGAGCTCCCCTGACTCAGGCAATGGTCACGCGACACGAGGGAAGAAAGGATGCATTCCTCGCAACACGATCAAAGGTAGTTTAAAGGCGAAGCTGTTGGAGGCAAGGATGGAAAGCCATAAGGTCCAGTTGCGCCAGGTCCTGAAGCATAAGATCTAG 2199 46.34 MTKVSPKKPQLPAPFPPTLNQLPDLDLHYRPGSSRPTRRRIRSPARVRRVVAPLGKRSRPETPLLKWKIDDAGSGANGVQQEEDEKRLPLESSQRGRIRGCKGRKVVVSARKLAAGIWRLLLQEAAASEGRNGGQGRTEDLVGFQTNLHLKVHHQSHCYSNYKNIDFDFGEPRTGHLAPALHPDEKIAFNSEMNDLLHSPHSVSDSRNRLLCKFEPSFRYSNSAMEGATKWEPACLKTPVEARQIYNQMRLLDQHGAVLALSALESELEQAHLQIEELQAERNASKKKLEYFLRKVAEEKTLWRSREHEKIRACVDDIKAELNREKKTRQRVEMINSKLVNELADAKLSVKRFMQDYEKERKERSLVEEVCDELAKEVGEDKARIEALKRESMKLRDEADEERRMLQMAEVWREERVQMKLVDAKVALEEKYSQMRNLVADLEDFLRLKSETPDVSEMKKALLLREAAASVNIQDVTEFVYEPSNPDDIFSVFEDVNFGESNEREIGQCDAYSPPCHASKVETASLEANVTDRIGIQRHTDSFVARNSGIEEDESGWETVSHLEDQGSSNSPEQSVASIKKNHRESNASVSGIEWEGNGGGDSPLTEISEVCSVPSKQLKKISSIARLWKSCSNNEGYKLISLEGINARLSNGRLSSASIFSADGGSVRSGISPPELAGQWSSPDSGNGHATRGKKGCIPRNTIKGSLKAKLLEARMESHKVQLRQVLKHKI 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5138988 5143020 + CmoCh16G008940.1 Cmo16g00894 399929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00894 732 MobiDBLite consensus disorder prediction 545 602 - -
Cmo16g00894 732 MobiDBLite consensus disorder prediction 561 593 - -
Cmo16g00894 732 PANTHER GB|AAF24581.1 8 732 IPR043424 -
Cmo16g00894 732 Coils Coil 343 405 - -
Cmo16g00894 732 MobiDBLite consensus disorder prediction 62 91 - -
Cmo16g00894 732 MobiDBLite consensus disorder prediction 677 697 - -
Cmo16g00894 732 MobiDBLite consensus disorder prediction 1 44 - -
Cmo16g00894 732 PANTHER ACTIN CYTOSKELETON-REGULATORY COMPLEX PAN-LIKE PROTEIN 8 732 - -
Cmo16g00894 732 Coils Coil 261 295 - -
Cmo16g00894 732 MobiDBLite consensus disorder prediction 545 560 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00894 - - - csv:101221647 1176.39
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo01g01183 Cmo16g00894 CCT
Cmo09g00951 Cmo16g00894 CCT
Cmo09g00951 Cmo16g00894 ECH
Cmo01g01183 Cmo16g00894 ECH
Cmo06g00920 Cmo16g00894 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01353 Cmo-Chr2:8058039 Cmo16g00894 Cmo-Chr16:5138988 2.44E-40 dispersed
Cmo09g00951 Cmo-Chr9:4999968 Cmo16g00894 Cmo-Chr16:5138988 0 dispersed
Cmo16g00894 Cmo-Chr16:5138988 Cmo20g00174 Cmo-Chr20:873837 1.96E-18 dispersed
Cmo01g01183 Cmo-Chr1:9618144 Cmo16g00894 Cmo-Chr16:5138988 9.54E-176 wgd
Cmo16g00894 Cmo-Chr16:5138988 Cmo04g01033 Cmo-Chr4:5169346 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g509 . Blo03g01451 Bda07g00362 Bda09g00401 . Bpe08g01123 Bma10g00547 Bma13g01056 Cmo16g00894 Cmo06g00920 Cma01g01132 Cma09g00953 . Car09g00866 Sed05g0664 Cpe06g00768 Cpe02g00770 Bhi09g01642 Tan01g4552 Cmetu06g1796 . Hepe01g1277 Mch11g1189 . . . . . . . . . . Cone14ag1143 Cone15ag1161 Lsi02g01905 Csa07g01090 . . Blo07g00906 Blo10g00831 . Bda12g00908 Bpe11g00549 . Bma07g01296 Bma14g00337 . Cmo01g01183 Cmo09g00951 . . . Car16g00841 . . . . . . . . . Cla09g01008 Cam09g1065 Cec09g1066 Cco09g1083 . . Cre09g1029 . . . Cme01g01046
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003664 3 1 3 4 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 0 1 2 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00894 Cmo_Chr16 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0