Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00898 ATGACCCACTTTCTCGAACCAAGATTCCACCAAACCCCATTTCCCCCCCTTCTCCGCCGTATCCCCAAATCTCCACCGTCCATTTCAATCCGATGCCGCGGCGGCGGCGCCCGCGACCTCCAATCTCGATTAGACTCCATCAACAACACCCAGAAGCTCACTGAAGCCATGAAGCTCGTCTCCGCCGCCAAAGTCCGCCGAGCCCAAGAAGCCGTAATCAACAGTCGCCCCTTTGCCCAATCCCTCGCCCAATTTCTCCATTTCATCACCCAACAAATCCAACCACATGAAATCGATTTCCCCTTTCTAAACCCTGCACCCGTCGGAAAAGTCGCCCTCGTCGTCTTCACCGGCGACCGGGGACTCTGTGGGGGTTTCAACGCTTCCGTGATAAAAACAGCCGACACCCGATTGGCCGAATTGAAAAATCTCGATCTGGGTCACATCCTAATCAGCGTTGGAAAAAAGGGTAACTCGCATTTCCGCCGCCGGTCCGACGTTCAAGTCGATAAATACATAACCGGCTGCGGCGGCGGTTCAGTACCGACAGCAAAAGAAGCACAAACCATTGCAGACATTGTGTTTTCTCTGTTCATCAGCGAAGAAGTGGACAAAGTGGAACTAATTTACACAAAATTCGTTTCGTCGCTGAAATCTGAGCCTGTGATTGAGACATTGCTGCCATTGTTGGGCGATGGGGAAGGCATGGGAGATGGGGGGTTTAGATTGACAACGAAGGAGGGGAAATTGAAGGTGGAGAGAGAGGGGAAAAGGGGGAATTTGGAGGAAATTCCGGCATTGTTGGAGTTCGAACAAGACCCAGTTCAGATCTTGGATGGGATGATAGCTCTGTATTTGAACAGCCAGATTTTGAGGGCTTTGCAGGAATCCATGGCGAGTGAGGTGGCAGCGAGGATGAACGCCATGAGTAATGCTTCTGAGAATGCTCTGGAGTTGAAGAACTCTGTTTTGGTTGCTTATAATCGAGAGAGACAGGCTAAGATTACTGGGGAAATTCTGGAAATTGTTGCTGGAGCTGAGGCTCTTCAAGGATTTTGA 1059 50.71 MTHFLEPRFHQTPFPPLLRRIPKSPPSISIRCRGGGARDLQSRLDSINNTQKLTEAMKLVSAAKVRRAQEAVINSRPFAQSLAQFLHFITQQIQPHEIDFPFLNPAPVGKVALVVFTGDRGLCGGFNASVIKTADTRLAELKNLDLGHILISVGKKGNSHFRRRSDVQVDKYITGCGGGSVPTAKEAQTIADIVFSLFISEEVDKVELIYTKFVSSLKSEPVIETLLPLLGDGEGMGDGGFRLTTKEGKLKVEREGKRGNLEEIPALLEFEQDPVQILDGMIALYLNSQILRALQESMASEVAARMNAMSNASENALELKNSVLVAYNRERQAKITGEILEIVAGAEALQGF 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5274939 5275997 - CmoCh16G008980.1 Cmo16g00898 399933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00898 352 PRINTS ATP synthase gamma subunit signature 108 127 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo16g00898 352 PRINTS ATP synthase gamma subunit signature 204 221 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo16g00898 352 PRINTS ATP synthase gamma subunit signature 296 315 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo16g00898 352 PRINTS ATP synthase gamma subunit signature 327 348 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo16g00898 352 PANTHER ATP SYNTHASE GAMMA CHAIN 13 350 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo16g00898 352 Pfam ATP synthase 38 349 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo16g00898 352 Gene3D ATP synthase, gamma subunit, helix hairpin domain 249 349 - -
Cmo16g00898 352 Gene3D ATP synthase, gamma subunit, helix hairpin domain 35 100 - -
Cmo16g00898 352 CDD F1-ATPase_gamma 38 346 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo16g00898 352 Hamap ATP synthase gamma chain [atpG]. 34 349 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo16g00898 352 PANTHER ATP SYNTHASE GAMMA CHAIN, CHLOROPLASTIC-LIKE 13 350 - -
Cmo16g00898 352 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 37 349 IPR035968 GO:0015986|GO:0045261|GO:0046933
Cmo16g00898 352 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 37 349 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cmo16g00898 352 ProSitePatterns ATP synthase gamma subunit signature. 335 348 IPR023632 -
Cmo16g00898 352 Gene3D - 104 232 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00560 Cmo-Chr3:5539010 Cmo16g00898 Cmo-Chr16:5274939 1.24E-129 dispersed
Cmo16g00898 Cmo-Chr16:5274939 Cmo18g00273 Cmo-Chr18:1797316 8.26E-74 dispersed
Cmo16g00898 Cmo-Chr16:5274939 Cmo13g00771 Cmo-Chr13:7446276 2.62E-141 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00898 K02115 - csv:101214682 550.821