Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00903 ATGAACACCGTCAATTTGGGAACGGTTGTTGAACCGATGGTGAACCTCCCACCTCCCATTCCGAAGGAGAAAGTCAAAAGGAAATCTTCCAAAAAGAGCGTTAAGGAGCATCAGGAGCCAAAAGCTCTATCCTCATTTGCCAACATTTCCTTTAAATCTGATAATAGTCGGCGAAGGTACATAACTGAGGAGATAAAGAAGTTAGGAAGAGGAAACATCTCTGCTCAAATTTTTTCATTTGGTGAGCTATCTACTGCTACGAATAACTTCAGCCAAGACAATCTATTGGGGGAAGGTGGTTTTGGAAGGGTTTACAAGGGCATCCTCGAAGGCACAAACCAAGTAACGGCCGTGAAGCAGCTCGACCGAAATGGATATCAAGGAAACAGAGAATTCCTTGTAGAGGTTTTGATGTTGAGCCTTCTTCACCATCCTAACCTTGTGAATTTGGTTGGGTATTGTGCTGATGGAGATCAGAGGATTTTGGTTTACGAGTGCATGGCTAACGGTTCCTTGGAGGATCATCTTCTTGATATACCGCCAGATAAGCAGTGTCTGGACTGGAAGACGAGGATGAAAATTGCCGAAGGAGCGGCAAAAGGACTTGAATACTTGCATGAAACTGCCAGTCCGCCCGTGATATACCGTGATTTCAAAGCTTCAAACATATTGTTGGATGAGGAATTCAATCCAAAGCTCTCTGATTTTGGTCTTGCAAAGTTAGGTCCTACTGGGGATAAATCTCATGTTTCCACTAGGGTGATGGGAACCTATGGTTACTGTGCTCCTGAATATGCGCTTACGGGACAATTGACAACGAAATCAGATGTCTACAGCTTTGGTGTCGTGTTTCTGGAGATTATAACTGGAAGACGGGTTATAGACAATGCTAGACCAACAGCAGAACAAAATTTAATTACTTGGGCACAACCACTATTCAAAGACAGAAGGAAATTTACCCTAATGGCAGATCCAAAGCTAGAAGGAAATTACTCAGTGAAGGCTCTGTATCAAGCTCTAGCAGTAGCAGCCATGTGTTTACAAGAGGAAGCGGGTACTCGACCATTGATCAGCGACGTGGTTACAGCAATTGAATACTTAGCCGCAGACAAGGACATCGATGAAGACATAGATGACGATTCGAATTTGGGACCAGATTCAGGTTCAGGAGAAGGTTCTCCGGATAGAAGTAGGAACGATGGAGATAAAATTGTGGAGGGTGATGGTGATGGTGATGGTGATGGGAGGACCTTGGTCCTAGATTTTGAGTTCTTAGGTTATGATCTAAAGGGTGTGATTCTAAGCCCAAAACTTCTCAAAACGGCTCCTTCTATAAGCCACTCCGGGGGCAAGCTGGGCAGAGTTGCAGCGATGATCACTTTGGGGGCCTCCACTTCCCAAGCCTCTTCGTTGATTACTCAATGGCCCTCCTATTTCTTTCTATGGCGGTCTAACTCTGTTTCTAATTCTTCTATTTCCATTTGCGCCTCCTCCAAGAGGCTCTACAGGGCTGAATTTAGTTCTCTGAAGAGTGTTCGCAGCGCTTCTCCAAATGTGAATATGTTTCATGCTTCCTTGCAGTGTCGACAAAGTTCTTTCTTGTGCACCAATTCATTTTTTGAAACTAGACAACATGACAAGGAGAGGGCGTTTCTGTCTGACATAAATGATTGGTCTAAGAGTACTAGGCAACTGAAACAAGAGAAGCTCTTTAGGTTTTCAGAAACCGAGATCCTGACAAAGAATGACGAAGAAAAGCTAAGAAAAAAAGAAAATCTCATTGGCTATGGGACTTTGCATTGTTACAACAGTCTTTGCCCTCCATATTCTAAGGTTCAGACAAATTTGGGAAGCAACTGTTCCAATGCTTCTAATGATCCTAATTGTATAAACCCTCCAACTAATGTGTTATCGGATGAATTCGGGAAACAAGAACCTATAAATTTTGAACGAACTGAAAATGTTGCAACTATAGATAGGATGATAAGTGACAGGGTACCTTTACTTGAGACTGTCAAGTTTTCACGTGGTGAATGCAATGGAGACACTAATTCGTATTCTGGGGAACGGCCCATGAGCAAGCCTGCAAATAATGTTTTGCATAGTCAGGTTGTTCCTATGCAAAGTAACAAAAAGTATTCTGTTTCTCAAAATGGAAAGGGGTCAATTATGCGTCACGTACCAAATGTTTCACCTAAAGGCAGAAATAGAAATATCTCTTTGGGAAAGGTGAATAGTGTACTAAAAACTTCGAAATGTACTGAAGCTGCTAATGGAATAAATAAGGGTGTAGCTGGGGAAGAATTTTCTAAAGTGATCGTCAATGGAAGTGGCACCAAGATGATGGAAGTACTTGCAACTGCTCATAAGCCAGATATAAAGGAGAGGCTTAATGGTGTATATGAAAGCGTTCTTGTTGTTGATGGTGTATCTGCAGCAAAGGAAGTTGTTTCAATAAAGGAGAGGCTTAATAGTGTATATGAAAGCGTTCTTGTTGTTGATGGTGTATCTGCAGCAAAGGAAGTTGTTTCAATGCTTACTACCAAGTACAAGAATCTGGTGCATGCTTGCGATACTGAGGTGGCCAAGATTGATGTGAAGCAAGAAACACCCGTTGACCATGGTGAAATAATATGCTTCAGTATTTATTCAGGACCGAAAGCAGATTTTGGAAATGGAAAGTCTTGCATCTGGGTGGATGTTCTTGATGGTGGCGGTAAGGAAATTTTGCTTCAATTTGCACCATTCTTCGAAGATCCTTTGATCAGAAAGGTCTGGCACAACTACAGCTTTGACAATCACATTATTGAAAACTATGGGATTAAGATTTCTGGCTTCCATGCTGACACGATGCACATGGCACGGTTATGGGATTCATCAAGGAGAATGAATGGTGGATATTCACTTGAAGCTCTTTCTTGTGATACAAAGGTCATGTCTGGGGCTAAATTGGACCAGGAAAAAGAGTTGATAGGTAAAGTGTCCATGAAAACTATCTTTGGCCGGAAGAAGATGAAAAAGGATGGATCTGAAGGCAAACTTATAGTCATTCCCCCTGTTGAAGAACTTCAACGAGAAGAACGGAAACCATGGGTATCTTATTCTGCATTAGATTCAATATGCACGCTGAAGCTTTATGAGAGCTTGAAGAAAAAACTGTCTGACATGCCTTGGGAGAGGGATGGAGAAAGGATTCCGGATAAAACAATGTTCAACTTTTATGAAGATTATTGGAAACCATTTGGTGAAGTTCTTGTCAGAATGGAAACTGAGGGAATGCTAGTTGATAGGCCATATCTTGCTGAGATAGAAAAATTGGCCAAAGCAGAACACGAGGTTGCTGCTAACAGATTTCGTAACTGGGCTTCAGAGTACTGCCCTGATGCCAAGTACATGAATGTTGGAAGTGATGCACAAGTGCGCCAATTGCTCTTTGGTGGCACTTGTAACAGTAAGAACCCTGAAGAGTCTCTTCCAACTGAAAGGACATTCAAAATTCCGAACAGTGAAAAAGTCACTGAAGAAGGGAAGAAAACTCCCAGCAAGTTTCGGAATATTACTTTACGTCGCTTCAGTGATGAGGCTCTCTCAACAGAATTGTACACAGCAACTGGTTGGCCTTCAGTGAGTGGGGATGCTCTGAAGATCTTAGCAGGCAAGGTCTCTGCAGAATTTGATGACTTCACCGACGACCCTCAGTCTGACACTGAGGTTGTCAACGATTTTGAGACAATGCCTCATGAAGAAAACAGAAGGCGTATAGTTCATGAATGTGCAAATATGTCTGATTATGGAACTGCTTTAAAAGCATTTAAATTGAAGGAGGAGGGCATGGAAGCCTGTCATGCTATTGCTGCTTTATGCGAAATCTGCTCTATTGACTCGTTGATATCAAATTTCATCCTTCCCTTACAGGGAAGCAATATATCTGGTAAGAATGGGCGTGTCCATTGTTCTCTAAACATCAACACAGAAACTGGCCGCCTCTCCGCTCGGAGACCAAGTTTGCAGAATCAACCGGCTCTGGAAAAGGACCGATATAAGATCCGTCAGGCCTTTATAGCTTCTCCTGGAAATTCCCTCATTGTTGCTGATTATGGCCAGCTGGAACTTAGGATTCTTGCTCATCTTGCCAATTGTCAGAGCATGCTGGACGCCTTTAAAGCTGGGGGAGATTTCCATTCAAGAACTGCAATGAATATGTACCCTCATATTCGTAAAGCTGTGGAAGAAGGAAGCGTGCTTCTTGAGTGGGATCCTCAACCTGGGGAAGATAAACCTCCAGTTCCATTGTTGAAGGATGCCTTTGCTTCTGAAAGAAGGAAAGCTAAAATGCTTAATTTTTCCATTGCATATGGCAAGACTCCTATTGGCCTTTCCAAAGATTGGAAGGTTACTGTGGAGGAAGCAAGTAAGACGGTTGACTTGTGGTATAATGAAAGAACAGAGGTTCGTAGATGGCAAGAACTACGAAGGGAAGAGACTGAGAAGAAATCATGTGTTCGCACATTGCTTGGACGAGCTCGTCAGTTTCCTTCAATGAAGCAAGTTACTCGTGCCCAAAAAGGGCATATAGAAAGAGCTGCTATTAACACGCCTGTGCAGGGTAGTGCTGCCGATGTTGCCATGTGTGCCATGCTGGAAATATCTAAAAATTCACGTTTGAGGGAACTTGGATGGAGGCTGCTTTTGCAGGTTCATGATGAAGTGATCTTGGAAGGACCAACTGAGTCAGCTGAGGTTGCTAAGGCCATTGTTGTTGATTGCATGTCGAAACCCTTCAATGGAAAGAATATTCTTAAAGTCGACCTTGCTGTGGATGCCAAGTGTGCACAAAACTGGTATTCTGCTAAATAG 4857 42.68 MNTVNLGTVVEPMVNLPPPIPKEKVKRKSSKKSVKEHQEPKALSSFANISFKSDNSRRRYITEEIKKLGRGNISAQIFSFGELSTATNNFSQDNLLGEGGFGRVYKGILEGTNQVTAVKQLDRNGYQGNREFLVEVLMLSLLHHPNLVNLVGYCADGDQRILVYECMANGSLEDHLLDIPPDKQCLDWKTRMKIAEGAAKGLEYLHETASPPVIYRDFKASNILLDEEFNPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYALTGQLTTKSDVYSFGVVFLEIITGRRVIDNARPTAEQNLITWAQPLFKDRRKFTLMADPKLEGNYSVKALYQALAVAAMCLQEEAGTRPLISDVVTAIEYLAADKDIDEDIDDDSNLGPDSGSGEGSPDRSRNDGDKIVEGDGDGDGDGRTLVLDFEFLGYDLKGVILSPKLLKTAPSISHSGGKLGRVAAMITLGASTSQASSLITQWPSYFFLWRSNSVSNSSISICASSKRLYRAEFSSLKSVRSASPNVNMFHASLQCRQSSFLCTNSFFETRQHDKERAFLSDINDWSKSTRQLKQEKLFRFSETEILTKNDEEKLRKKENLIGYGTLHCYNSLCPPYSKVQTNLGSNCSNASNDPNCINPPTNVLSDEFGKQEPINFERTENVATIDRMISDRVPLLETVKFSRGECNGDTNSYSGERPMSKPANNVLHSQVVPMQSNKKYSVSQNGKGSIMRHVPNVSPKGRNRNISLGKVNSVLKTSKCTEAANGINKGVAGEEFSKVIVNGSGTKMMEVLATAHKPDIKERLNGVYESVLVVDGVSAAKEVVSIKERLNSVYESVLVVDGVSAAKEVVSMLTTKYKNLVHACDTEVAKIDVKQETPVDHGEIICFSIYSGPKADFGNGKSCIWVDVLDGGGKEILLQFAPFFEDPLIRKVWHNYSFDNHIIENYGIKISGFHADTMHMARLWDSSRRMNGGYSLEALSCDTKVMSGAKLDQEKELIGKVSMKTIFGRKKMKKDGSEGKLIVIPPVEELQREERKPWVSYSALDSICTLKLYESLKKKLSDMPWERDGERIPDKTMFNFYEDYWKPFGEVLVRMETEGMLVDRPYLAEIEKLAKAEHEVAANRFRNWASEYCPDAKYMNVGSDAQVRQLLFGGTCNSKNPEESLPTERTFKIPNSEKVTEEGKKTPSKFRNITLRRFSDEALSTELYTATGWPSVSGDALKILAGKVSAEFDDFTDDPQSDTEVVNDFETMPHEENRRRIVHECANMSDYGTALKAFKLKEEGMEACHAIAALCEICSIDSLISNFILPLQGSNISGKNGRVHCSLNINTETGRLSARRPSLQNQPALEKDRYKIRQAFIASPGNSLIVADYGQLELRILAHLANCQSMLDAFKAGGDFHSRTAMNMYPHIRKAVEEGSVLLEWDPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPIGLSKDWKVTVEEASKTVDLWYNERTEVRRWQELRREETEKKSCVRTLLGRARQFPSMKQVTRAQKGHIERAAINTPVQGSAADVAMCAMLEISKNSRLRELGWRLLLQVHDEVILEGPTESAEVAKAIVVDCMSKPFNGKNILKVDLAVDAKCAQNWYSAK 1618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5382706 5402053 + CmoCh16G009030.1 Cmo16g00903 399938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00903 1618 Gene3D - 834 1089 IPR036397 GO:0003676
Cmo16g00903 1618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Cmo16g00903 1618 Pfam Protein kinase domain 91 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00903 1618 MobiDBLite consensus disorder prediction 375 412 - -
Cmo16g00903 1618 Gene3D Phosphorylase Kinase; domain 1 50 165 - -
Cmo16g00903 1618 PANTHER DNA POLYMERASE I A, CHLOROPLASTIC/MITOCHONDRIAL 819 1618 - -
Cmo16g00903 1618 Gene3D Transferase(Phosphotransferase) domain 1 167 383 - -
Cmo16g00903 1618 ProSiteProfiles Protein kinase domain profile. 90 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo16g00903 1618 SUPERFAMILY DNA/RNA polymerases 1070 1618 IPR043502 -
Cmo16g00903 1618 Pfam 3'-5' exonuclease 875 1053 IPR002562 GO:0003676|GO:0006139|GO:0008408
Cmo16g00903 1618 SUPERFAMILY Ribonuclease H-like 828 1054 IPR012337 -
Cmo16g00903 1618 Gene3D - 1324 1614 - -
Cmo16g00903 1618 CDD DNA_polA_I_Ecoli_like_exo 849 1087 - -
Cmo16g00903 1618 CDD DNA_pol_A_plastid_like 1205 1615 - -
Cmo16g00903 1618 SUPERFAMILY Protein kinase-like (PK-like) 73 364 IPR011009 -
Cmo16g00903 1618 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Cmo16g00903 1618 MobiDBLite consensus disorder prediction 15 40 - -
Cmo16g00903 1618 SMART polaultra3 1348 1578 IPR001098 GO:0003677|GO:0003887|GO:0006260
Cmo16g00903 1618 MobiDBLite consensus disorder prediction 713 738 - -
Cmo16g00903 1618 CDD STKc_IRAK 96 365 - -
Cmo16g00903 1618 PRINTS DNA-polymerase family A (pol I) signature 1338 1353 IPR002298 GO:0003887|GO:0006261
Cmo16g00903 1618 PRINTS DNA-polymerase family A (pol I) signature 1315 1337 IPR002298 GO:0003887|GO:0006261
Cmo16g00903 1618 PRINTS DNA-polymerase family A (pol I) signature 1360 1383 IPR002298 GO:0003887|GO:0006261
Cmo16g00903 1618 PRINTS DNA-polymerase family A (pol I) signature 1561 1574 IPR002298 GO:0003887|GO:0006261
Cmo16g00903 1618 PRINTS DNA-polymerase family A (pol I) signature 1390 1403 IPR002298 GO:0003887|GO:0006261
Cmo16g00903 1618 PRINTS DNA-polymerase family A (pol I) signature 1531 1547 IPR002298 GO:0003887|GO:0006261
Cmo16g00903 1618 Gene3D - 1369 1538 - -
Cmo16g00903 1618 PANTHER DNA POLYMERASE I 819 1618 IPR002298 GO:0003887|GO:0006261
Cmo16g00903 1618 MobiDBLite consensus disorder prediction 393 412 - -
Cmo16g00903 1618 Pfam DNA polymerase family A 1282 1615 IPR001098 GO:0003677|GO:0003887|GO:0006260
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00988 Cmo-Chr1:6539717 Cmo16g00903 Cmo-Chr16:5382706 6.14E-130 dispersed
Cmo16g00903 Cmo-Chr16:5382706 Cmo08g00010 Cmo-Chr8:55204 7.46E-163 dispersed
Cmo04g01025 Cmo-Chr4:5129780 Cmo16g00903 Cmo-Chr16:5382706 0 transposed
Cmo05g00632 Cmo-Chr5:3185501 Cmo16g00903 Cmo-Chr16:5382706 5.60E-16 transposed
Cmo16g00903 Cmo-Chr16:5382706 Cmo04g01023 Cmo-Chr4:5127032 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74976 PF00476 DNA_pol_A 1.60E-70 No_clan Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00903 K02335 - csv:101212518 1734.54