Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00908 ATGTGGAGGGACGCTGGAGCTCCTGCTGATTCTTTCTATGAGGTTCGCCCTGAGTGCACCGATGTTCCCAAAACCCGCTTCAAGATCAGGGCTGGGAAGACCTTGAGTGTTAGAAAATGGCAAGGAGCATTCAATCCCGAAGGCCAACTGGACATTGCGAAGACTCTAAATCGCATTCATCGTGGGGGGATCCATCCTTCAATCAGAGGAGAAGTGTGGGAGTTTCTTCTTGGTTGTTATGATCCAACCAGCACCTATGAGGAAAGAGAAGAGATTCGCCAGCGTCGAAGGATACAGTATGCTACGTTTAAGGAAGACTGTCGACAGATGTTTCCTGTCGTTGGAAGTGGTAGATACATCACAGCTCCTGTAATCACAGAGGATGGTACGCCTATTCATGATCCGCTTGTACTTTTGGAAACAAATCCAGGGAGTGGTCCGCTTATACCCCAAGATACTGCCGTTGCTGTTGCGGATGCTGTTTCCGATGCTGTTTCCGATGCGGTTTCCGATGCTGTTTCTGATGCTGTTACTGATGCTGATACTGTTGCCAATCCTGATGCTGATGCTGTTGCCAATCCTGATGCTGTTGCCACTGCTGATGCTAATGCCGATGCTATTGCCGATGCTGTTGCTGCTGTTGCCGATGCTGTTGCTGCTGTTGCCGATGCCGATGCCGATGCCGATGCCGATGCTGTTGCCGATGCTGATACTGATGCTGAAGCTGATGCTGATGCTGGTGCGGATGCTGTTGCTGATGCCGATGATGATGCCGTTGCAGATGCGGATGCGGATGCTGTTGCTGTTGCCGATGCCGATGCTGTTGCCGATACTGATGTTGTTGCTGTTACTGATGCTGTTGCCGATGCTGTTGCTGTTGCCAATGCCGATGCTGTTGCTGATGCTGATGCCGATGCCGATGCCAATGCGGATGCCGATGCCGATGCCAATGCCAATGCCAATGCGGATGCCGATGCCGATGTCAATGCTGATGCCGATGCCAATGCCAATGCTGATGCGGATCCGAATGTTCCACAATCAAAGTCACAATCAAATTCCTCTAACAGTATGGCACCTGTGACTGATCCAAAAATAATTCAGTGGATGCTTACTTTACATCAGATAGGTCTTGATGTGGTTCGGACTGACAGAACATTGGTGTTCTATGAAAAGCAAGAAAACTTGTCGAAACTTTGGGATATTCTTGCTGTTTATGCTTGGATCGATAAAGACGTTGGCTACTGTCAAGGAATGAGTGATCTTTGTTCCCCCATGATAATGCTTCTCGAGGATGAAGGCGATGCGTTTTGGTGCTTTGAACGTTTGATGCGCAGATTGCGAGGGAACTTTCGATGCACGGATAGCTCTGTCGGTGTGGAGACTCAACTCAGTAATCTGGCTGCTATCACGCAAGTGATTGATCCAAAGCTCCATCAACACTTGGAGACACTTGGTGGTGGCGATTATCTTTTCGCTTTCAGGATGCTTATGGTTTTGTTTCGTCGAGAGTTTTCGTTTTGCGATTCTTTGTATCTCTGGGAGATGATGTGGGCACTGGAATATGATCCTGATCAGTTCACAGTGTATGAAGAACCTGATGTGTGCAGTGATAAAGGCGATGGGTCGAAAGGAAAAGCAAAAGCGATACGTCAATGCGGGAAATACGAGAGGGAGAACTTGAAAGCAAAGAACTCACAAGCTCCTCTTCCAATCTCTGTTTTCCTTGTTGCTAGTGTGTTGAAAGATAAGAGCACAAAGCTGCTTACAGAAGCTCGGGGTCTCGACGATGTTGTGAAGATATTGAACGACATGACTGGAAATCTGGATGCCAAGAAAGCATGCACTGGAGCAATGAAGCTTCACAAGAAATATCTAAAAAAGGCCAAGAAGCCATAG 1896 47.89 MWRDAGAPADSFYEVRPECTDVPKTRFKIRAGKTLSVRKWQGAFNPEGQLDIAKTLNRIHRGGIHPSIRGEVWEFLLGCYDPTSTYEEREEIRQRRRIQYATFKEDCRQMFPVVGSGRYITAPVITEDGTPIHDPLVLLETNPGSGPLIPQDTAVAVADAVSDAVSDAVSDAVSDAVTDADTVANPDADAVANPDAVATADANADAIADAVAAVADAVAAVADADADADADAVADADTDAEADADAGADAVADADDDAVADADADAVAVADADAVADTDVVAVTDAVADAVAVANADAVADADADADANADADADANANANADADADVNADADANANADADPNVPQSKSQSNSSNSMAPVTDPKIIQWMLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMIMLLEDEGDAFWCFERLMRRLRGNFRCTDSSVGVETQLSNLAAITQVIDPKLHQHLETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDQFTVYEEPDVCSDKGDGSKGKAKAIRQCGKYERENLKAKNSQAPLPISVFLVASVLKDKSTKLLTEARGLDDVVKILNDMTGNLDAKKACTGAMKLHKKYLKKAKKP 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5423401 5427380 + CmoCh16G009080.1 Cmo16g00908 399943

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00908 631 Gene3D - 456 630 - -
Cmo16g00908 631 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 339 630 - -
Cmo16g00908 631 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 1 128 - -
Cmo16g00908 631 ProSiteProfiles TBC/rab GAP domain profile. 63 520 IPR000195 -
Cmo16g00908 631 MobiDBLite consensus disorder prediction 334 358 - -
Cmo16g00908 631 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 348 450 - -
Cmo16g00908 631 MobiDBLite consensus disorder prediction 340 358 - -
Cmo16g00908 631 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 47 480 IPR035969 -
Cmo16g00908 631 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 458 624 IPR035969 -
Cmo16g00908 631 SMART tbc_4 328 543 IPR000195 -
Cmo16g00908 631 PANTHER - 339 630 - -
Cmo16g00908 631 PANTHER - 1 128 - -
Cmo16g00908 631 Pfam Rab-GTPase-TBC domain 347 518 IPR000195 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00908 - - - cmax:111483266 557.755
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01172 Cmo-Chr2:7046443 Cmo16g00908 Cmo-Chr16:5423401 1.32E-09 dispersed
Cmo05g00749 Cmo-Chr5:3977261 Cmo16g00908 Cmo-Chr16:5423401 4.70E-06 dispersed
Cmo06g01696 Cmo-Chr6:11684652 Cmo16g00908 Cmo-Chr16:5423401 1.12E-10 dispersed
Cmo08g00245 Cmo-Chr8:1490278 Cmo16g00908 Cmo-Chr16:5423401 1.09E-43 dispersed
Cmo15g01072 Cmo-Chr15:6961068 Cmo16g00908 Cmo-Chr16:5423401 2.97E-09 dispersed
Cmo16g00032 Cmo-Chr16:149257 Cmo16g00908 Cmo-Chr16:5423401 5.01E-09 dispersed
Cmo16g00908 Cmo-Chr16:5423401 Cmo18g01368 Cmo-Chr18:12822298 2.10E-14 dispersed
Cmo16g00908 Cmo-Chr16:5423401 Cmo04g01016 Cmo-Chr4:5091813 1.69E-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g459 . . . . Bpe09g00186 . Bma10g00537 Bma13g01036 Cmo16g00908 . . . . . . . . . . . . . . . Cla10g00525 Cam10g0520 Cec10g0537 Cco10g0527 Clacu10g0542 Cmu10g1368 Cre10g0770 Cone6ag0083 Cone9ag0098 . . Lsi02g01909 Csa03g00532 . Cme06g02277 . Blo10g00812 Bda05g00732 Bda12g00897 . Bpe03g00801 . . Sed07g1928 . . . Cma16g00851 . Car16g00853 . Cpe01g00856 Bhi11g00647 Tan01g1682 Cmetu06g1724 . . Mch10g1229 . . . . . . . . Lsi05g00620 . . Cme01g01052
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004197 2 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 6 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo16g00908 Cmo_Chr16 FPKM 87.816818 94.927933 67.05854 61.887318 24.991468 23.928556 21.180693 141.312866 149.250931 134.145844